Structure

Laboratory of Macromolecular Crystallography


Publications

At 2003, January 01

The full texts of papers, preprints and theses may be found here.

Papers in journals

  • Lunin, V.Y., Afonine P.V. & Urzhumtsev, A.G. (2002). "Likelihood-based refinement. I. Irremovable model errors". Acta Cryst. A58, 270-282.

  • Lunin, V.Y., Urzhumtsev, A. & Bockmayr, A. (2002). "Direct phasing by binary integer programming". Acta Cryst. A58, 283-291.

  • Lunin, V.Y., Lunina, N.L., Ritter, S., Frey, I., Berg, A., Diderichs, K., Podjarny, A.D., Urzhumtsev, A. & Baumstark M.W. (2001). "Low-resolution data analysis for low-density lipoprotein particle". Acta Cryst. D57, 108-121.

  • Urzhumtsev, A.G. & Lunin, V.Y. (2001). "Fast differentiation algorithm and efficient calculation of the exact matrix of second derivatives". Acta Cryst. A57, 451-460.

  • Lunin, V.Y. (2000). "Fixed-scale wavelet-type approximation of periodic density distributions". Acta Cryst. A56, 73-84.

  • Lunin, V.Y., Lunina, N.L. & Urzhumtsev, A.G. (2000). "Connectivity properties of high-density regions and ab initio phasing at low resolution". Acta Cryst. A56, 375-382.

  • Lunin, V.Y., Lunina, N.L., Petrova, T.E., Skovoroda, T.P., Urzhumtsev, A.G. & Podjarny, A.D. (2000). "Low-resolution ab initio phasing: problems and advances". Acta Cryst. D56, 1223-1232.

  • Urzhumtsev, A.G., Lunina, N.L., Skovoroda, T.P., Podjarny, A.D. & Lunin, V.Y. (2000). "Density constraints and low-resolution phasing". Acta Cryst. D56, 1233-1244.

  • Petrova, T.E., Lunin, V.Y. & Podjarny, A.D. (2000). "Ab initio low-resolution phasing in crystallography of macromolecules by maximization of likelihood". Acta Cryst. D56, 1245-1252.

  • Shlyapnikov, S.V., Lunin, V.V., Perbandt, M., Polyakov, K.M., Lunin, V.Yu., Levdikov, V.M., Betzel, Ch. & Mikhailov, A.M.. (2000). "Atomic structure of the Serratia marcescens endonuclease at 1.1 A resolution and the enzyme reaction mechanism." Acta Cryst. D56, 567-572.

  • Skovoroda, T.P. & Lunin, V.Yu. (2000). "Reliability of Maximum Likelihood-Based Figures of Merit". Crystallography Reports, 45, No. 2, 195-198.

  • Lunin, V.Y., Lunina, N.L. & Urzhumtsev, A.G. (1999). "Seminvariant density decomposition and connectivity analysis and their application to very low resolution macromolecular phasing". Acta Cryst. A55, 916-925.

  • Petrova, T.E., Lunin, V.Y. & Podjarny, A.D. (1999). "A likelihood-based search for the macromolecular position in the crystalline unit cell". Acta Cryst. A55, 739-745.

  • Lunin, V.Yu., Blagova, E.V., Levdikov, V.M., Lunin, V.V., Shlyapnikov, S.V., Perbandt, M., Raishankar, K.S., Betzel, H. & Mikhailov, A.M. (1999). "Extracellular Endonuclease of Serratia marcescens. I. Three-Dimensional Structure of Crystalline Protein at 1.7A Resolution", Molecular Biology, 33, 2, 180-187.

  • Shlyapnikov, S.V., Blagova, E.V., Levdikov, V.M., Lunin, V.Yu., Lunin, V.V., Mikhailov, A.M., Betzel, Ch., Rajashankar, K.S. & Perbandt, M. (1999). "Extracellular Endonuclease of Serratia marcescens. II. Active Site Amino Acid Residues and a Hypothetical Mechabism of Enzyme Functioning". Molecular Biology, 33, 3, 398-404.

  • Petrova, T.E., Lunin, V.Yu., Lunina, N.L. & Skovoroda, T.P. (1999). "Maximum Likelihood Approach to Choosing a Prior Distribution of Atomic Coordinates in Macromolecular Structures". Biophysics, 44, 1, 18-22.

  • Urzhumtseva, L.M. & Urzhumtsev, A.G. (1999). "Tcl/Tk based programs. III. CRITXPL: graphical analysis of the X-PLOR refinement log-files". J.Appl. Cryst., 32, 376-377.

  • Lunin, V.Yu., Lunina, N.L., Petrova, T.E., Urzhumtsev A.G. & Podjarny A.D. (1998). "On the Ab initio solution of the Phase Problem for Macromolecules at Very Low Resolution. II. Generalized Likelihood Based Approach to Cluster Discrimination". Acta Cryst. D54, 726-734.

  • Lunin, V.Yu., Levdikov, V.M., Shliapnikov, S.V., Blagova, E.V., Lunin V.V., Wilson, K.S. & Mikhailov A.M. (1997). "Three-dimensional structure of Serratia marcescens nuclease at 1.7 ? resolution and mechanism of its action". FEBS Letters, 412, 217-222.

  • Urzhumtsev, A., Tete-Favier, F., Mitschler, A., Barbanton, J., Barth, P., Urzhumtseva, L., Biellmann, J-F., Podjarny, A.D. & Moras, D. (1997). "A 'specificity' pocket inferred from the crystal structures of the complexes of aldose reductase with the pharmaceutically important inhibitors tolrestat and sorbinil". Structure, 5, 5, 601-612.

  • Urzhumtseva, L.M. & Urzhumtsev A.G. (1997). "Tcl/Tk-based programs. II. CONVROT: a program to recalculate different rotation descriptions". J.Appl.Cryst., 30, 402-410.

  • Urzhumtsev, A.G. (1997). "Local improvement of electron density maps". Acta Cryst. D53, 540-543.

  • Podjarny, A.D., Howard, E.I., Urzhumtsev, A.G. & Grigera, J.R. (1997). "A Multicopy Modelling of the Water Distribution in Macromolecular Crystals". Proteins, 28, 303-312.

  • Lunin, V.Yu. & Lunina, N.L. (1996). "The Map Correlation Coefficient for Optimally Superposed Maps". Acta Cryst. A52, 365-368.

  • Urzhumtsev, A.G., Skovoroda, T.P. & Lunin, V.Yu. (1996). "A procedure compatible with X-PLOR for the calculation of electron-density maps weighted using an R-free-likelihood-based approach". J.Appl.Cryst., 29, 741-744.

  • Urzhumtsev, A.G., Vernoslova, E.A. & Podjarny, A.D. (1996). "Approaches to Very Low Resolution Phasing of the Ribosome 50S particle from Thermus thermophilus by the Few-Atoms-Models and Molecular-Replacement Methods". Acta Cryst. D52,1092-1097.

  • Lunin, V.Yu. & Skovoroda, T.P. (1995). "R-free Likelihood-Based Estimates of Errors for Phases Calculated from Atomic Models". Acta Cryst. A51, 880-887.

  • Lunin, V.Yu., Lunina, N.L., Petrova, T.E., Vernoslova, E.A., Urzhumtsev, A.G. & Podjarny, A.D. (1995). "On the ab-initio Solution of the Phase Problem for Macromolecules at Very Low Resolution: the Few Atoms Model Method". Acta Cryst., D51, 896-903.

  • Navaza, J. & Vernoslova, E. (1995). "On the Fast Translation Functions for Molecular Replacement". Acta Cryst. A51, 445-449.

  • Urzhumtsev A.G. & Podjarny A.D. (1995). "On the Solution of the Molecular Replacement Problem at Very Low Resolution: Application to Large Complexes". Acta Cryst. D51, 888-895.

  • Tete-Favier, F., Barth, P., Mitchler, A., Podjarny, A.D., Rondeau, J.-M., Urzhumtsev, A., Biellmann, J.-F. & Moras, D. (1995). "Aldose Reductase from Pig Lens". European Journal of Medicinal Chemistry, Vol.30, S, 589-603.

  • Urzhumtsev, A.G. & Podjarny, A.D. (1994). "Programs for translation searches with two independent models simultaneously". J.Appl.Cryst., 27, 122-124.

  • Lunin, V.Yu. (1993). "Electron-Density Histograms and the Phase Problem". Acta Cryst. D49, 90-99.

  • Vernoslova, E.A. & Lunin, V.Yu. (1993). "The FROG PC series: programs for electron-density and model investigation for proteins". J.Appl.Cryst., 26, 291-294.

  • Lunin, V.Yu. & Woolfson, M.M. (1993). "Mean Phase Error and the Map Correlation Coefficient". Acta Cryst. D49, 530-533.

  • Morgunova, E.Yu., Mikhailov, A.M., Urzhumtsev, A.G. & Vainstein, B.K. (1992). "Crystal structure of the CMtV capsid at 6A resolution". Kristallografiya (USSR), 37, 2, 396-404. (In Russian).

  • Lunin, V.Yu. & Skovoroda, T.P. (1991). "Frequency-Restrained Structure Factor Refinement. I. Histogram Simulation". Acta Cryst. A47, 45-52.

  • Lunin, V.Yu. & Vernoslova, E.A. (1991). "Frequency-Restrained Structure Factor Refinement. II. Comparison of Methods". Acta Cryst. A47, 238-243.

  • Chirgadze, Yu.N., Nevskaya, N.A., Vernoslova, E.A., Nikonov, S.V., Sergeev, Yu.V., Brazhnikov, E.V., Fomenkova, N.P., Lunin, V.Yu. & Urzhumtsev, A.G. (1991). "Crystal structure of calf eye lens gamma-crystalline IIIb at 2.5A resolution: its relation to function". Experimental Eye Research, 53, 295-304.

  • Chirgadze, Yu.N., Brazhnikov, E.V., Nikonov, S.V., Fomenkova, N.P., Garber, M.B., Lunin, V.Yu., Urzhumtsev, A.G. , Chirgadze, N.Yu. & Nekrasov, Yu.V. (1991). "Crystal structure of ribosomal factor G from bacteria Thermus thermophilus at low resolution". Dokl.Acad.Nauk SSSR, 320, 488-491 (In Russian).

  • Urzhumtsev, A.G. (1991). "How to calculate planarity restraints". Acta Cryst. A47, 723-727.

  • Urzhumtsev, A.G. (1991). "Low-resolution phases: influence on SIR-syntheses and retrieval with double-step filtration". Acta Cryst. A47, 794-801.

  • Lunin, V.Yu., Urzhumtsev, A.G. & Skovoroda, T.A. (1990). "Direct low-resolution phasing from electron-density histograms in protein crystallography". Acta Cryst., A46, 540-544.

  • Lobsanov, Yu.D., Pletnev, V.Z., Vtyurin, N.N., Lubnin, M.Yu., Mokulskii, M.A., Urzhumtsev, A.G., Lunin, V.Yu. & Luzyanina, T.B. (1990). "X-ray study of the pea lectin-carbohydrate complex at 2.4A resolution. I. Atomic model". Bioorganic Chemistry (USSR), 16, 12, 1589-1598. (In Russian).

  • Urzhumtsev, A.G., Lunin, V.Yu. & Luzyanina, T.B. (1989). "Bounding a Molecule in a Noisy Synthesis". Acta Cryst., A45, 34-39.

  • Urzhumtsev, A.G., Lunin, V.Yu. & Vernoslova, E.A. (1989). "FROG - high-speed restraint-constraint refinement program for macromolecular structure". J.Appl.Cryst., 22, 500-506.

  • Lunin, V.Yu. (1989). "The Calculation of the Second Moments for the Values of Fourier Syntheses with Random Structure Factors". Acta Cryst. A45, 501-505.

  • Lunin, V.Yu. (1988). "Use of Information on Electron Density Distribution in Macromolecules". Acta Cryst. A44, 144-150.

  • Lunin, V.Yu. (1988). "The retrieval of absent structure factors in X-ray structure determination". Dokl.Akad.Nauk SSSR, 299, 2, 363-366. (In Russian).

  • Chirgadze, Yu.N., Nevskaya, N.A., Fomenkova, N.P., Nikonov, S.V., Sergeev, Yu.V., Brazhnikov, E.V., Garber, M.B., Lunin, V.Yu., Urzhumtsev, A.G. & Vernoslova, E.A. (1986). "Spatial structure of gamma-crystalline IIIb from calf lens at 2.5A resolution". Dokl.Akad.Nauk SSSR, 290, 2, 492-495. (In Russian).

  • Lunin, V.Yu., Urzhumtsev, A.G., Vernoslova, E.A., Chirgadze, Yu.N., Nevskaya, N.A. & Fomenkova, N.P. (1985). "Phase Improvement in Protein Crystallography Using a Mixed Electron Density Model". Acta Cryst., A41, 166-171.

  • Lunin, V.Yu. & Urzhumtsev, A.G. (1985). "Program construction for macromolecule atomic model refinement based on the fast Fourier transform and fast differentiation algorithms". Acta Cryst. A41, 327-333.

  • Lunin, V.Yu. (1985). "Use of the Fast Differentiation Algorithm for Phase Refinement in Protein Crystallography". Acta Cryst. A41, 551-556.

  • Vazina, A.A., Korystova, A.F., Shelestov, V.M., Vernoslov, S.E., Lunin V.Yu., Kozlov M.A. & Kraizman, V.L. (1985). "Investigation of the structure of calmoduline metal-binding centers by EXAFS-spectroscopy". Mol.Biol.(USSR), 19, 6, 1643-1647. (In Russian).

  • Lunin, V.Yu. & Urzhumtsev, A.G. (1984). "Improvement of Protein Phases by Coarse Model Modification". Acta Cryst., A40, 269-277.

  • Vazina, A.A., Koristova, A.F., Shelestov, V.M., Vernoslov, S.E., Lunin V.Yu , Kozlov M.A. & Kraisman, V.L.. (1984). "Investigation of Ca2+-binding centers of parvalbumine by distant fine structure of X-ray absorption spectra". Mol.Biol.(USSR), 18, 3, 681-684. (In Russian).

  • Lunin, V.Yu. & Urzhumtsev, A.G. (1983). "Improvement of electron density maps for proteins using atomic model structure". Kristallografiya (USSR), 28, 310-315. (In Russian).

  • Chirgadze, Yu.N., Sergeev, Yu.V., Fomenkova, N.P., Nikonov, S.V. & Lunin, V.Yu. (1980). "Structure determination of gamma-crystalline II from calf lens at 5A resolution". Dokl.Akad.Nauk SSSR, 250, 3, 762-765. (In Russian).

  • Chirgadze, Yu.N., Oreshin, V.D., Sergeev, Yu.V., Nikonov, S.V. & Lunin, V.Yu. (1980). "Structure of gamma-crystallin IIIb from calf lens at 5A resolution". FEBS Letters, 118, 2, 296-298.

The full texts of papers


Papers in digests

  • Lunin, V.Y., Urzhumtsev, A. & Bockmayr, A. (2002). "Direct phasing by Binary integer programming and its use for envelope determination". CCP4 Newsletter on Protein Crystallography, 40_12.

  • Afonine, P., Lunin, V.Y. & Urzhumtsev, A. (2002). "Search of the optimal strategy for refinement of atomic models". CCP4 Newsletter on Protein Crystallography, 40_14.

  • Lunina, N.L., Lunin, V.Y. & Podjarny, A.D. (2002). "Retrieval of lost reflections in high resolution Fourier syntheses by a 'soft' solvent flattening". CCP4 Newsletter on Protein Crystallography, 41_10.

  • Afonine, P., Lunin, V.Y. & Urzhumtsev, A.G. (2001). "Maximum-likelihood refinement of atomic models using least-squares criterion". CCP4 Newsletter on protein crystallography, 39, 52-56.

  • Urzhumtsev, A.G. & Lunin, V.Y. (2001). "Efficient calculation of the exact matrix of the second derivatives". CCP4 Newsletter on protein crystallography, 39, 60-67.

  • Lunin, V.Y., Podjarny, A.D. & Urzhumtsev, A. (2001). "Low-resolution phasing in macromolecular crystallography". In : Advances in Structure Analysis, CSCA, Prague, Czech Republic, R.Kuzel & J.Hasek, eds., 4-36.

  • Urzhumtsev, A., Podjarny, A. & Lunin, V.Y. (2001). "Ab initio phasing starting from low resolution". Invited article. Euroconference on Phasing, 23-27 June 2001, Martina Franca, Italy, 4.35-4.40.

  • Lunin, V.Y. & Urzhumtsev, A.G. (1999). "Maximal Likelihood Refinement. It works, but why?". CCP4 Newsletter on Protein Crystallography, 37, 14-28.

  • Urzhumtseva, L.M. & Urzhumtsev, A.G. (1998). " Programs Tcl/Tk based crystallographic software : current state and new programs". CCP4 Newsletter on Protein Crystallography, 35, 22-24.

  • Urzhumtsev, A.G., Podjarny, A.D. & Lunin, V.Y. (1998). "On density modification at very low resolution", CCP4 Newsletter on Protein Crystallography, 35, 25-33.

  • Lunin, V.Y. (1997). "The likelihood based choice of priors in statistical approaches to the phase problem". In Direct Methods for Solving Macromolecular Structures, ed. S.Fortier, NATO ASI Series C, Vol.507, 451-454.

  • Podjarny, A.D., Urzhumtsev, A.G. & Lunin, V.Y. (1997). "Model based low resolution phasing". In Direct Methods for Solving Macromolecular Structures, ed. S.Fortier, NATO ASI Series C, Vol.507, 421-431.

  • Urzhumtsev, A.G., Lunin, V.Yu. & Podjarny, A.D. (1997). "Low resolution crystallographic images". Iin Recent Advances in Phasing, ed. By K.S.W.Wilson, G.Davies, A.W.Ashton & S.Bailey, Proceedings of the CCP4 Study Weekend, University of York, 3-4 January, 1997, 207-214.

  • Podjarny, A.D. & Urzhumtsev, A.G. (1997). "Low resolution phasing". In Methods in Enzymology, Academic Press, San Diego., C.W.Carter, Jr., R.M.Sweet, eds. 276A, 641-658.

  • Urzhumtsev, A.G. (1996). "Density growing: a method for local improvement of electron density maps". Joint CCP4 and ESF-EACBM Newsletter on Protein Crystallography, 32b, 36-39.

  • Urzhumtsev, A.G. (1996). "Relations between some rotation descriptions for molecular replacement procedure". Joint CCP4 and ESF-EACBM Newsletter on Protein Crystallography, 32b, 43-46.

  • Urzhumtseva L.M. & Urzhumtsev A.G. (1996). "Tcl/Tk-based programs. I. CONFOR - user-friendly converter for crystallographic data files". Joint CCP4 and ESF-EACBM Newsletter on Protein Crystallography, 32b, 40-42.

  • Podjarny, A.D., Rees, B. & Urzhumtsev, A.G. (1996). "Density modification in X-ray crystallography". In Methods in Molecular Biology, 56, "Crystallographic Methods and Protocols", ed. C.Jones, B.Milloy, M.R.Sanderson, Totowa, New Jersey, Humana Press, 205-226.

  • Urzhumtsev, A.G. & Podjarny, A.D. (1995). "On the problem of solvent modeling in macromolecular crystals using diffraction data: 1.The low-resolution range". Joint CCP4 and ESF-EACBM Newsletter on Protein Crystallography, 31, 12-16.

  • Volkmann, N., Schlunzen, F., Urzhumtsev, A.G., Vernoslova, E.A., Podjarny, A.D., Roth, M., Pebay-Peyroula , E., Berkovitch-Yellin, Z., Zaytzev-Bashan, A. & Yonath, A. (1995). "On ab-initio phasing of ribosomal particles at very low resolution". Joint CCP4 and ESF-EACBM Newsletter on Protein Crystallography, 31, 23-32.

  • Ivanov, M.E. & Urzhumtsev, A.G. (1995). "FROG PC - a menu-based environment for atomic model refinement program on a personal computer". Joint CCP4 and ESF-EACBM Newsletter on Protein Crystallography, 31, 20-22.

  • Lunin, V.Yu., Lunina, N.L., Petrova, T.E., Vernoslova, E.A., Urzhumtsev, A.G. & Podjarny, A.D. (1994). "On the ab-initio solution of the phase problem for macromolecules at very low resolution. The Few Atoms Model method". Joint CCP4 and ESF-EACBM Newsletter on Protein Crystallography, 30, 37-44.

  • Vernoslova, E.A. & Urzhumtsev, A.G. (1994). "Current development in the program package FROG for atomic model refinement". Joint CCP4 and ESF-EACBM Newsletter on Protein Crystallography, 30, 27-28.

  • Urzhumtsev, A.G., Podjarny, A.D. & Navaza, J. (1994). "On the solution of the molecular replacement problem at very low resolution". Joint CCP4 and ESF-EACBM Newsletter on Protein Crystallography, 30, 29-36.

  • Urzhumtseva, L.M. & Urzhumtsev, A.G. (1994). "Published methods in crystallography. Reference database on personal computers". Joint CCP4 and ESF-EACBM Newsletter on Protein Crystallography, 30, 45-47.

  • Podjarny, A.D., Urzhumtsev, A.G. & Navaza, J. (1994). "On the solution of the molecular replacement problem at very low resolution: application to a ribosome model crystal". ACA Transactions, 30, 109-120.

  • Urzhumtsev, A.G. (1992). "On the reliability of atomic models in the PDB: stereochemical point of view". Joint CCP4 and ESF-EACBM Newsletter on Protein Crystallography, 27, 31-32.

  • Vernoslova, E. & Lunin, V. (1992). "FAN Scalar Field Analysis". Joint CCP4 and ESF-EACBM Newsletter on Protein Crystallography, 27, 35.

  • Vernoslova, E. (1992). "FFT Discrete Three-Dimensional Fourier transform". Joint CCP4 and ESF-EACBM Newsletter on Protein Crystallography, 27, 36.

  • Vernoslova, E & Lunin, V. (1992). "CAN Comparative Analysis of three-dimensional Functions". Joint CCP4 and ESF-EACBM Newsletter on Protein Crystallography, 27, 37.

  • Urzhumtsev, A.G., Lunin, V.Yu. & Vernoslova, E.A. (1990). "New refinement program FROG gives new possibilities to study macromolecular models". Proc.of the First Intern. Meeting on Structure and Chemistry of Ribonucleases, Moscow, USSR, December 1989, 410-415.

  • Urzhumtsev, A.G., Lunin, V.Yu. & Vernoslova, E.A. (1989). "The program complex FROG for local refinement of atomic structures of macromolecules". In Computing methods of protein engineering, Software, Institute of Mathematics AS BSSR & Institute of biochemistry, 86, 86-97, Minsk. (In Russian).

  • Vazina, A.A., Korystova, A.F., Shelestov, V.M., Vernoslov, S.E., Kozlov M.A., Kraizman, V.L. & Lunin V.Yu. (1984). "The study of metal-binding sites in troponine, calmoduline and parvalbumine with the use of EXAFS spectra". IV USSR Meeting on the use of synchrotron sources, Novosibirsk 1984, Proceedings, 250-254. (In Russian).

The full texts of papers


Preprints & Software

  • Lunin, V.Yu. (1994). "Mathematical tools for X-ray structure analysis of macromolecules" Lecture notes for students of department of applied mathematics of Puschino University. (In Russian)

  • Lunin, V.Yu. (1991). "Use of the electron-density-syntheses histograms or solving of the phase problem in protein crystallography". Preprint, Pushchino Research Center, Russia. (In Russian)

  • Urzhumtsev, A.G., Lunin, V.Yu. & Vernoslova, E.A. (1988). "Program package FROG". Software, FORTRAN, 10, NCBI AN SSSR, Pushchino, Russia. (In Russian)

  • Lunin, V.Yu. (1986). "The use of information on electron density distribution in proteins. The retrieval of absent structure factors". Preprint, NCBI AN SSSR, Pushchino, Russia. (In Russian)

  • Urzhumtsev, A.G. (1985). "Using of local averaging for protein image analysis in electron density maps". Preprint, NCBI AN SSSR, Pushchino, Russia (In Russian)

  • Lunin, V.Yu., Urzhumtsev, A.G., Vernoslova, E.A., Chirgarze, Yu.N., Fomenkova, N.P. & Nevskaya, N.A. (1984). "Using of atomic mixed model for phase improvement in protein crystallography". Preprint, NCBI AN SSSR, Pushchino, Russia. (In Russian)

  • Lunin, V.Yu. (1984.) "The use of the fast differentiation algorithm for phase refinement". Preprint, Pushchino, NCBI AN SSSR, Russia. (In Russian)

  • Lunin, V.Yu. & Urzhumtsev, A.G. (1983). "Program construction for macromolecular atomic model refinement based on Fast Fourier and Fast Differentiation algorithms". Preprint, NCBI AN SSSR, Pushchino. (In Russian)

  • Lunin, V.Yu. (1983). "X-RAY analysis. Problems in structure determination". Preprint, NCBI AN SSSR, Pushchino, Russia. (In Russian)

  • Gadzhiev, A.M., Matushin, A.M., Vazina, A.A., Yasenev, M.Y., Shuvalov, B.N. & Lunin, V.Yu. (1983). "The software for high-speed X-ray difractometry at high time resolution". Preprint, NCBI AN SSSR, Pushchino, Russia. (In Russian)

  • Lunin, V.Yu. (1982). "Optimization of calculation of structure factors in protein crystallography". Preprint, NCBI AN SSSR, Pushchino, Russia. (In Russian)

  • Vernoslov, S.E. & Lunin, V.Yu. (1982). "Some algorithmic aspects of the treatment of EXAFS spectra". Preprint, NCBI AN SSSR, Pushchino, Russia. (In Russian)

  • Lunin, V.Yu. (1982). "The use of the maximum likelihood approach to estimate phase errors in protein crystallography". Preprint, NCBI AN SSSR, Pushchino, Russia. (In Russian)

  • Urzhumtsev, A.G. & Lunin, V.Yu. (1982). "Electron-density-maps improvement by use of refinement of atomic model structure. II. Phase improvement for ?-crystallin". Preprint, NCBI AN SSSR, Pushchino. (In Russian)

  • Lunin, V.Yu. & Urzhumtsev, A.G. (1981). "Electron-density-maps improvement by use of refinement of atomic model structure. I. The method's description". Preprint, NCBI AN SSSR, Pushchino. (In Russian)

  • Lunin, V.Yu. (1979). "The program package FFT". Software, FORTRAN, 3, NCBI AN SSSR, Pushchino, Russia. (In Russian)

  • Lunin, V.Yu. (1979). "The phasing program of L.Ten-Eyck". Software, FORTRAN, 4, NCBI AN SSSR, Pushchino, Russia. (In Russian)

The full texts of papers


Theses

  • Petrova, T.E. (2000). "Using of the maximum likelihood principle in the solution of the phase problem in macromolecula crystallography". Resume of Ph.D. Theses, Puschino, Russia. (In Russian)

  • Petrova, T.E. (2000). "Using of the maximum likelihood principle in the solution of the phase problem in macromolecula crystallography". Ph.D. Theses, ITEB RAS, Puschino, Russia. (In Russian)

  • Lunina, N.L. (1998). "Computational approaches to the solution of the low resolution phase problem in macromolecular crystallography". Resume of Ph.D. Theses, ONTI PNC RAN, Pushchino, Russia. (In Russian)

  • Lunina, N.L. (1998). "Computational approaches to the solution of the low resolution phase problem in macromolecular crystallography". Ph.D. Theses, ITEB RAS, Pushchino, Russia. (In Russian)

  • Vernoslova, E.A. (1996). "The development and the use of software for the protein crystallography purposes". Resume of Ph.D.Theses, ONTI PNC RAN, Pushchino, Russia. (In Russian)

  • Vernoslova, E.A. (1996). "The development and the use of software for the protein crystallography purposes". Ph.D.Theses, Institute of Crystallography RAS, Moscow, Russia. (In Russian)

  • Urzhumtsev, A. (1996). "Developpement de methodes et logiciels pour la determination de structures macromoleculaires par radiocristallographie. Applications e differents projets". Synthese d'activite scientifique, IGBMC, Strasbourg, 1996.

  • Lunin, V.Yu. (1992). "The use of statistical properties of the electron density Fourier syntheses for the solution of the phase problem in protein crystallography". Resume of Dr.Sci.Theses, ONTI PNC RAN, Pushchino, Russia. (In Russian)

  • Lunin, V.Yu. (1992). "The use of statistical properties of the electron density Fourier syntheses for the solution of the phase problem in protein crystallography". Dr.Sci.Theses, Institute of Crystallography RAS, Moscow, Russia. (In Russian)

  • Urzhumtsev, A.G. (1985). "Using a mixed atomic model for structure-factor phases improvement in protein crystallography". Resume of Ph.D.Theses, Moscow, Russia. (In Russian)

  • Urzhumtsev, A.G. (1985). "Using a mixed atomic model for structure-factor phases improvement in protein crystallography". Ph.D.Theses, Institute of Crystallography, Moscow, Russia (In Russian)

  • Lunin, V.Yu. (1976). "On asymptotic behavior of the solution of the first boundary value problem for quasi-linear partial differential equations containing a small parameter". Resume of Ph.D. Theses, MSU, Moscow, Russia. (In Russian)

  • Lunin, V.Yu. (1976). "On asymptotic behavior of the solution of the first boundary value problem for quasi-linear partial differential equations containing a small parameter". Ph.D. Theses, MSU, Moscow, Russia. (In Russian)

The full texts of papers


Abstracts

  • Afonine, P., Lunin, V.Y. & Urzhumtsev, A. (2002). "Quadratic approximation of the maximum-likelihood criterion ". Acta Cryst., A58, S, C263 [Collected Abstracts, XIXth IUCr Congress & General Assembly, 6-15 August 2002, Geneve, Switzerland, 263].

  • Fokine, A., Lunina, N., Lunin, V.Y. & Urzhumtsev, A. (2002). "Bulk solvent and its role in macromolecular phasing". Acta Cryst., A58, S, C267 [Collected Abstracts, XIXth IUCr Congress & General Assembly, 6-15 August 2002, Geneve, Switzerland, 267].

  • Lunin, V.Y. (2002). "Determination of three-dimensional structure of biological macromolecules: mathematics and computers". V International Congress on Mathematical Modelling, September30-October 6, 2002, Dubna, Moscow Region, Book of Abstracts, Volume II, Joint Institute of Nuclear Research, Laboratori of Information Technologies, Council on mathematical modelling of RAS, Dubna 2002, 209.

  • Lunina, N.L. (2002). "The use of connectivity properties of electron density distributions in determination of structures of biological macromolecules". V International Congress on Mathematical Modelling, September30-October 6, 2002, Dubna, Moscow Region, Book of Abstracts, Volume II, Joint Institute of Nuclear Research, Laboratori of Information Technologies, Council on mathematical modelling of RAS, Dubna 2002, 210.

  • Urzhumtsev, A., Lunina, N., Chabriere, E. & Lunin, V.Y. (2002). "Direct phasing in crystallography : connectivity of electron density maps". Z. Krist., Suppl., 19, 16. [Collected Abstracts, DGK Meeting, 4-7 March 2002, Kiel, Germany],

  • Urzhumtsev, A., Lunina, N.L. & Lunin, V.Y. (2002). "The connectivity-based choice in macromolecular low resolution ab-initio phasing". Acta Cryst., A58, S, C43 [Collected Abstracts, XIXth IUCr Congress & General Assembly, 6-15 August 2002, Geneve, Switzerland, 43]

  • Urzhumtsev, A., Lunin, V.Yu., Lunina, N.L., Ritter, S., Frey, I., Keul, J., Diederichs, K., Podjarny, A. & Baumstark, M. (2002). "LDL particle : Direct structure determination ". Collected Abstracts, ACA Meeting, 25-30 May 2002, San Antonio, USA, 33

  • Lunin, V.Y., Urzhumtsev, A.G. & Podjarny, A.D. (2001). "Phasage ab initio a basse resolution". AFC2001 Colloque de l'Association Francaise de Cristallographie, Orsay,3-6 juillet 2001, 95.

  • Afonine, P., Lunin, V.Y. & Urzhumtsev, A.G. (2001). "Simulation du critere de vraisemblance maximale par le critere de moindre carre". AFC2001 Colloque de l'Association Francaise de Cristallographie, Orsay,3-6 juillet 2001, 97.

  • Chabriere E., Lunina, N., Urzhumtsev, A.G. & Lunin, V.Y. (2001). Phasage ab initio par criteres de connectivite: de la basse resolution aux structures secondaires. AFC2001 Colloque de l'Association Francaise de Cristallographie, Orsay,3-6 juillet 2001, 99.

  • Podjarny, A., Joachimiak, A., Howard, E., Petrova, T., Chevrier, B., Sanishvili, R., Mitschler, A. & Moras, D. (2001). "Phasage MAD et SAD d'un complexe humain d'Aldose reductase-inhibiteur (AR, 36Kda) a 0,90 A de resolution", AFC2001 Colloque de l'Association Francaise de Cristallographie, Orsay,3-6 juillet 2001, 100.

  • Urzhumtsev, A., Podjarny, A. & Lunin, V.Y. (2001). Ab initio phasing starting from low resolution. Euroconference on Phasing Biological Macromolecules (Phabio). Martina Franca - Italy, June 23-27, 2001, 4.35-4.40.

  • Afonine, P., Lunin, V.Y. & Urzhumtsev, A.G. (2001). Maximum-likelihood refinement of atomic models using least-squares criterion. Euroconference on Phasing Biological Macromolecules (Phabio). Martina Franca - Italy, June 23-27, 2001, 4.47-4.51.

  • Afonine, P., Lunin, V.Y. & Urzhumtsev, A. (2001). "Maximum-likelihood refinement of atomic models using least squares criterion". ECM-20 Abstracts, XXth European Cryst.Meeting, 25-31 August 2001, Krakow, Poland, 148.

  • Chabriere, E., Lunina, N., Lunin, V.Y. & Urzhumtsev, A. (2001). "From low resolution to secondary structure elements". ECM-20 Abstracts, XXth European Cryst.Meeting, 25-31 August 2001, Krakow, Poland, 70.

  • Joachimiak, A., Howard, E., Petrova, T., Chevrier, B., Sanishvili, R., Mitschler, A. & Podjarny, A. (2001). "The MAD Experiment at 0.9 A Producing Atomic Resolution Experimental Electron Density for 36 kDa Human Aldose Reductase". ECM-20 Abstracts, XXth European Cryst.Meeting, 25-31 August 2001, Krakow, Poland, 72.

  • Lunin, V.V., Shlyapnikov, S.V., Perbandt, M., Betzel, Ch. & Mikhailov, A.M. (2000). "Magnesium-dependent Serratia marcescens endonuclease: three-dimensional structure at 1.1 A resolution and molecular mechanism of enzyme action". Acta Cryst. A56, S, S280.

  • Lunin, V. Y. & Urzhumtsev, A. G. (2000). "Maximal Likelihood refinement. It works, but why?". Acta Cryst. A56, S, S201.

  • Lunina, N.L., Lunin, V.Y. & Urzhumtsev, A.G. (2000). "Use of map connectivity properties in macromolecular ab-initio phasing". Acta Cryst. A56, S, S62.

  • Ritter, S., Lunina, N.L., Lunin, V.Y., Urzhumtsev, A.G., Podjarny, A.D., Frey, I., Diederichs, K. & Baumstark, M.W. (2000). "Crystallization and structure determination of human low density lipoprotein (LDL) at low resolution, using ab initio phases". Acta Cryst. A56, S, S299.

  • Urzhumtsev, A., Lunin, V. Y. & Lunina, N. (2000). "Density constraints and direct phasing". Acta Cryst. A56, S, S108.

  • Lunina, N.L., Lunin V.Y. & Urzhumtsev A.G. (2000). "Use of map connectivity properties in macromolecular ab-initio phasing". 19th European Crystallographic Meeting, Abstract book, 25th-31st August 2000 Nancy, France, 62.

  • Urzhumtsev, A., Lunin, V.Y. & Lunina, N. (2000). "Density constraints and direct phasing". 19th European Crystallographic Meeting, Abstract book, 25th-31st August 2000 Nancy, France, 108.

  • Lunin, V.Y. & Urzhumtsev, A. (2000). "Maximal Likelihood refinement. It works, but why?". 19th European Crystallographic Meeting, Abstract book, 25th-31st August 2000 Nancy, France, 201.

  • Ritter, S., Lunina, N.L., Lunin, V.Y., Urzhumtsev, A.G., Podjarny, A.D., Frey, I., Diederichs, K. & Baumstark, M.W. (2000). "Crystallizacion and structure determination of human low density lipoprotein (LDL) at low resolution, using ab initio phases". 19th European Crystallographic Meeting, Abstract book, 25th-31st August 2000 Nancy, France, 299.

  • Lunin, V.Y., Lunina, N.L., Podjarny, A.D., Ritter, S., Frey, I., Keul, J., Diederichs, K., Baumstark, M.W. & Urzhumtsev, A.G. (2000). "Structure of human low density lipoprotein (LDL) at low resolution: ab initio phasing methods for structure determination". ECM19 Satellite Meeting "Frontiers in macromolecular crystallography", Bishenberg, August, 31-September, 3, France, 31.

  • Lunina, N., Lunin, V.Y., Podjarny, A., Ritter, S., Frey, I., Keul, J., Diederichs, K., Baumstark, M. & Urzhumtsev, A. (2000). "Structure of human low density lipoprotein (LDL) at low resolution: structure determination and analysis". ECM19 Satellite Meeting "Frontiers in macromolecular crystallography", Bishenberg, August, 31-September, 3, France, 32.

  • Urzhumtsev, A.G., Podjarny, A. & Lunin, V.Y. (2000). "Direct phasing at low resolution: current state and expectations". Millenium Symposium on Structural Biology, 26-29 March 2000, Heidelberg, Germany, Collected Abstracts, 103.

  • Lunin, V.Y., Urzhumtsev, A.G. & Podjarny, A.D. (1999). "Low resolution phasing. Achievements and perspectives". XVIII Congress and General Assembly of IUCr, Glasgow, Scotland, UK, August 4-13, 1999. Collected Abstracts, 121.

  • Petrova, T.E., Lunin, V.Y. & Podjarny, A.D. (1999). "Ab-initio calculation of envelopes for macromolecules by maximization of likelihood". XVIII Congress and General Assembly of IUCr, Glasgow, Scotland, UK, August 4-13, 1999. Collected Abstracts, 183.

  • Lunina, N.L., Lunin, V.Y. & Urzhumtsev, A.G. (1999). "The connectivity-based choice in macromolecular low resolution ab-initio phasing". XVIII Congress and General Assembly of ICU, Glasgow, Scotland, UK, August 4-13, 1999. Collected Abstracts, 123.

  • Urzhumtsev, A.G., Lunina, N. & Lunin, V. (1999). "Proprietes Topologiques et Phasage Direct". GTBio-99, 12-15 Oct. 1999,Hourtin (Bordeaux, France), CO31.

  • Lunin, V.V., Lunin, V.Yu., Blagova, E.V., Shlyapnikov, S.V., Levdikov, V.M. & Mikhailov, A.M. (1998). "Serratia marcescens endonuclease refined structure of enzyme at 1.7A resolution and mechanism of its action". Eighteenth European Crystallographic Meeting, Praha, Czech Republic, August 15-20, 1998. Abstracts (B), 472-473.

  • Lunin, V.Yu., Lunina, N.L., Petrova, T.E., Urzhumtsev, A.G. & Podjarny A.D. (1998). "Very low resolution ab-initio phasing. Problems and advances". Eighteenth European Crystallographic Meeting, Praha, Czech Republic, August 15-20, 1998. Abstracts (A), 131-132.

  • Lunina, N.L. (1998). "Software for very low resolution ab-initio phasing". Eighteenth European Crystallographic Meeting, Praha, Czech Republic, August 15-20, 1998. Abstracts (B), 480-481.

  • Petrova, T.E., Lunin, V.Y. & Podjarny, A.D. (1998). "Likelihood base search of the center of a macromolecular object". Eighteenth European Crystallographic Meeting, Praha, Czech Republic, August 15-20, 1998. Abstracts (B), 481-482.

  • Podjarny, A.D., Lunina, N., Urzhumtsev, A.G., Vernoslova, E.A., Petrova, T. & Lunin, V. (1998). "Ab-initio phasing at 30 A of the t50S ribosomal particle with the Few Atoms Model method". ACA Annual Meeting, Arlington, Virginia, July 18-23, 1998, 11.03.08, 74.

  • Podjarny, A.D., Urzhumtsev, A.G., Vernoslova, E.A., Petrova, T., Lunina, N. & Lunin V. (1998). "Recent advances on the application of the few atom model method to the T50S ribosomal particle". Association Francaise de Cristallographie, AFC98, Orleans, 24-27 fevrier 1998, BCG-A02.

  • Skovoroda, T.P. & Lunin, V.Y. (1998). "Statistical properties of phase error estimates obtained on the bas marginal likelihood maximization". Eighteenth European Crystallographic Meeting, Praha, Czech Republic, August 15-20, 1998. Abstracts (B), 482.

  • Urzhumtsev, A.G., Lunin, V.Y. & Lunina, N.L. (1998). "Seminvariant density decomposition and connectivity analysis in the low resolution macromolecular phasing". Eighteenth European Crystallographic Meeting, Praha, Czech Republic, August 15-20, 1998. Abstracts (A), 482-483

  • Lunin, V.Yu. (1997). "Likelihood Based Choice of Priors in Statistical Approaches to the Phase Problem". In Direct Methods for Solving Macromolecular Structures, Lecture Notes, Erice, 22 May-2 June 1997, 457.

  • Lunin, V.Yu., Lunina, N.L., Petrova, T.E., Urzhumtsev, A.G. & Podjarny, A.D. (1997). "A generalized likelihood and the phase cluster choice problem". In Direct methods for solving macromolecular structures, Lecture Notes, Erice, Italy, May 22 - June 02 1997, 485.

  • Lunin, V.Yu., Urzhumtsev, A.G. & Podjarny, A.D. (1997). "The use of generalized likelihood based approach in low-resolution ab-initio phasing". Seventeenth European Crystallographic Meeting, Collected abstracts, Lisboa - Portugal 24/28 August 1997, 53.

  • Urzhumtsev, A.G., Lunin, V.Yu. & Podjarny, A.D. (1997). "Low Resolution Phasing: After First Images". Workshop "Validation and refinement of macromolecular structures", Abstracts, Porto, Portugal, August 29-30, 1997.

  • Lunin, V.Yu. & Skovoroda, T.P. (1997). "Statistical Properties of Phase Error Estimates Obtained on the Base of a Marginal Likelihood Maximization". Workshop "Validation and refinement of macromolecular structures", Abstracts, Porto, Portugal, August 29-30, 1997.

  • Lunin, V.Yu., Urzhumtsev, A.G. & Podjarny, A.D. (1997). "The solution of the low-resolution phase problem in protein crystallography". National conference on the use of X-ray, synchrotron radiations, neutrons and electrons in material studies, Dubna, 25-29 May 1997, 212. (In Russian)

  • Ivanov, M.E., Petrova, T.E. & Lunin, V.Yu. (1997). "The approximation of a prior distribution of atomic coordinates in macromolecular crystalls by the gradient of the likelihood function". National conference on the use of X-ray, synchrotron radiations, neutrons and electrons in material studies, Dubna, 25-29 May 1997, 218. (In Russian)

  • Lunina, N.L., Lunin, V.Yu. & Urzhumtsev, A.G. (1997). "Density growing" - a new approach to local improvement of Fourier syntheses". National conference on the use of X-ray, synchrotron radiations, neutrons and electrons in material studies, Dubna, 25-29 May 1997, 222. (In Russian)

  • Skovoroda, T.P. & Lunin, V.Yu. (1997). "The reliability of figures of merit defined on the base of maximal likelihood". National conference on the use of X-ray, synchrotron radiations, neutrons and electrons in material studies, Dubna, 25-29 May 1997, 225. (In Russian)

  • Lunin, V.V., Lunin, V.Yu., Blagova, E.V., Levdikov, V.M., Shliapnikov, S.V. & Mikhailov, A.M. (1997). "The atomic structure of endonuclease Sm1 at 1.7 ? resolution". National conference on the use of X-ray, synchrotron radiations, neutrons and electrons in material studies, Dubna, 25-29 May 1997, 221. (In Russian)

  • Podjarny, A.D., Urzhumtsev, A., Tęte-Favier, F., Mitschler, A., Barbanton, J., Barth, P., Urzhumtseva, L., Biellmann, J.-F., Moras, D. (1997). "The crystal structure of the complexes of aldose reductase with the inhibitors tolrestat and sorbinil". XVIIth European Cryst.Meeting, 24-28 August 1997, Lisbon, Portugal, 14.

  • Urzhumtsev, A. & Urzhumtseva, L. (1997). "New interactive tcl/tk-based software for macromolecular crystallographers". XVIIth European Cryst.Meeting, 24-28 August 1997, Lisbon, Portugal, 184.

  • Lunina, N.L. & Urzhumtsev, A. (1997). "Density growing: a new approach to the local improvement of electron density maps". XVIIth European Cryst.Meeting, 24-28 August 1997, Lisbon, Portugal, 92.

  • Lunin, V.Yu. (1996). "Low-resolution ab-initio phasing with Monte-Carlo and clusterization techniques". XVII Intern.Cryst.Congr., Seattle, USA, August 8-17, 1996, Coll.Abstr.,C-63.

  • Urzhumtsev, A.G., Podjarny, A.D., Mitschler A., Tete-Favier F., Barth P., Biellmann J.-F. & Moras D. (1996). "Etudes cristallographiques des complexes de l'aldose reductase et ses inhibiteurs". Les Cahiers IMABIO, HS, 4, 82.

  • Howard, E.I., Grigera, J.R., Podjarny, A.D. & Urzhumtsev, A.G. (1996). "Multicopy modeling of the solvent distribution in macromolecular crystals". XVII Intern.Cryst.Congr., Seattle, USA, August 8-17, 1996, Coll.Abstr., C-86.

  • Podjarny, A.D., Urzhumtsev, A.G. & Vernoslova, E.A. (1996). "Very low resolution phasing attempts of the ribosome 50S particle from T. thermophilus by the Few Atoms Model method". XVII Intern.Cryst.Congr., Seattle, USA, August 8-17, 1996, Coll.Abstr., C-67.

  • Grigera, J.R., Howard, E.I., Urzhumtsev, A.G. & Podjarny, A.D. (1996). "Hydration of biomacromolecules by multicopy molecular dynamics with diffraction constraints. Bringing into agreement diffraction and NMR data". Intern.Biophysics Congr. IUPAB, Amsterdam, the Netherlands, 1996, Coll.Abstr.

  • Podjarny, A.D., Urzhumtsev, A.G., Howard, E.I.. & Grigera, J.R. (1996). "Modelisation multicopie de la distribution du solvant dans les cristaux macromol culaires". AFC96, 10-13 Sept. 1996, Toulouse, 42.

  • Urzhumtsev, A.G., Lunin, V.Yu., Vernoslova, E.A., Urzhumtseva, L.M. & Podjarny, A.D. (1995). "La methode FAM pour le phasage ab-initio: Applications". AFC95, 24-27 Jan. 1995, Grenoble, BL15.

  • Lunin, V.Yu., Urzhumtsev, A.G., Vernoslova, E.A., Lunina, N.L., Petrova, T.E. & Podjarny, A.D. (1995). "La methode FAM pour le phasage ab-initio: Theorie". AFC95, 24-27 Jan. 1995, Grenoble, P07a.

  • Lunin, V.Yu. & Skovoroda, T.P. (1995). "R-free based maximum likelihood estimates of phase errors". 4th European Workshop on Crystallography of Biological Macromolecules, Como (Italy), May 21-25, O43.

  • Lunin, V.Yu., Lunina, N.L., Petrova, T.E., Vernoslova, E.A., Urzhumtsev, A.G. & Podjarny, A.D. (1995). "On the ab-initio solution of the phase problem for macromolecules at very low resolution: the Few Atoms Models method". 4th European Workshop on Crystallography of Biological Macromolecules, Como (Italy), May 21-25, O19.

  • Podjarny, A.D. & Urzhumtsev, A.G. (1995). "Le remplacement moleculaire a tres basse resolution". AFC95, 24-27 Jan. 1995, Grenoble, BL08.

  • Zagari, A., Sica, F., Vitagliano, L., Scarano, G., Urzhumtsev, A.G., Podjarny, A.D. & Bocchini, V. (1995). "Cristallisation et analyse preliminaire par rayons X du facteur d'elongation hyperthermophile EF 1alpha". AFC95, 24-27 Jan. 1995, Grenoble, P43.

  • Urzhumtsev, A.G. & Podjarny, A.D. (1995). "Very low resolution molecular replacement with envelope models". 4th European Workshop on Crystallography of Biological Macromolecules, Como (Italy), May 21-25, A04.

  • Urzhumtsev, A.G., Lunin, V.Yu., Vernoslova, E.A., Lunina, N.L., Petrova, T.E., Navaza, J. & Podjarny, A.D. (1994). "Very low resolution phasing with simple models". 15th Eur. Cryst. Meeting, Dresden, Germany, 28.8-2.9/1994, Coll.Abstr., R.Oldenbourg Verlag, Munchen, 217.

  • Lunin, V.Yu., Lunina, N.L., Petrova, T.E., Vernoslova, E.A., Urzhumtsev, A.G. & Podjarny, A.D. (1994). "A Monte Carlo Approach to low resolution phasing in protein crystallography". ACA Annual Meeting, June 25 - July 1, 1994, INFORUM, Atlanta, Georgia, Atlanta Convention Center, 178.

  • Podjarny, A.D., Urzhumtsev, A.G. & Navaza, J. (1994). "On the solution of the molecular replacement problem at very low resolution: application to a ribosome model crystal". ACA Annual Meeting, June 25 - July 1, 1994, INFORUM, Atlanta, Georgia, Atlanta Convention Center, 40.

  • Lunin, V.Yu. (1993). "Electron density histograms and the phase problem". Acta Cryst. A49, S MS-02.01.05.

  • Brazhnikov, E., Chirgadze, Yu., ?varsson, A., Svensson, A. & Lunin, V. (1993). "The Similarity of results obtained by Solvent Flattening and Low-Resolution Phase retrieval for the Improvement of Protein Electron Density Map". 3rd European workshop on crystallography of biological macromolecules, Como (Italy), May 24-8 1993, M4.

  • Urzhumtsev, A.G. & Podjarny, A.D. (1993). "Enveloppes moleculaires modulees en fonction de la distance au bord". R union francophone de cristallographie de macromolecules", Ste Odile (Strasbourg), 2-5 Juin 1993, P1.

  • Urzhumtsev, A.G., Podjarny,A.D., Cavarelli, J., Rees, B., Giege, R., Thierry, J.-C. & Moras, D. (1992). "Low-resolution phasing of the cubic form of the aspartyl tRNA synthetase complex confirmed by molecular replacement results". Journees Annuelles de l'Association Francaise de Cristallographie; Paris, 5-7 Mai 1992, Ministere de la Recherche et de l'Espace, II-21.

  • Urzhumtsev, A.G. (1992). "PDB models: errors in stereochemistry". XIVth Eur. Cryst. Meeting, 2-7 August 1992, Enschede, The Netherlands, 234.

  • Podjarny, A.D., Urzhumtsev, A.G., Cavarelli, J., Rees, B., Giege, R., Thierry, J.-C. & Moras, D. (1992). "The low-resolution structure of the cubic form of the aspartyl tRNA synthetase complex: comparison of molecular replacement results and previous ab-initio low-resolution phasing". XIVth Eur. Cryst. Meeting, 2-7 August 1992, Enschede, The Netherlands, 245.

  • Urzhumtsev, A.G. & Podjarny, A.D. (1993). "Envelopes moleculaires modulees en fonction de la distance au bord". Reunion francophone de cristallographie de macromolecules, Ste Odile (Strasbourg), 205 Juin 1993, P1.

  • Lunin, V.Yu., Urzhumtsev, A.G. & Skovoroda, T.A. (1990). "Direct low-resolution phasing in protein crystallography". 16th Int.School on Crystallography, Erice, Italy, 18-29 April, 1990, Coll.Abstr.

  • Lunin, V.Yu., Urzhumtsev, A.G. & Skovoroda, T.A. (1990). "Direct low-resolution phasing in protein crystallography". Acta Cryst., A46, S, C-113.

  • Urzhumtsev, A.G. (1990). "Molecular bounding by two step filtration of SIR-synthesis". Acta Cryst., A46, S, C-114.

  • Morgunova, E.Yu., Urzhumtsev, A.G., Mikhailov, A.M. & Vainstein, B.K. (1990). "The CMtV capsid protein structure at 6A resolution". Acta Cryst., A46, S, C-87-88.

  • Chirgadze, Yu.N., Vernoslova, E.A., Nikonov, S.V., Sergeev, Yu.V., Brazhnikov, E.V., Fomenkova, N.P., Lunin, V.Yu. & Urzhumtsev, A.G. (1989). "Refined structure of calf lens γ-crystallin IIIb at 2.5A resolution". XIIth European Cryst. Meeting, Moscow, USSR, August 1989, Coll.Abstr., 2, 362.

  • Urzhumtsev, A.G., Lunin, V.Yu. & Vernoslova, E.A. (1989). "FROG - new refinement program". XIIth European Cryst. Meeting, Moscow, USSR, August 1989, Coll.Abstr., 3, 193.

  • Lunin, V.Yu. & Skovoroda, T.P. (1989). "Frequency analysis - new approach to phase improvement in protein crystallography". XIIth European Crystallographic Meeting, Moscow 1989, Coll.Abstr., 3, 146.

  • Chirgadze, Yu.N., Nevskaya, N.A., Urzhumtsev, A.G. & Vernoslova, E.A. (1989). "Structure refinement of "dry" form of calf lens γ-crystallin IIIb at 1.9A resolution". XIIth European Cryst. Meeting, Moscow, USSR, August 1989, Coll.Abstr., 2, 363.

  • Murzin A.G. & Vernoslova E.A. (1988). "Computer modeling of protein hybrids: phage T4 lysozime with a Ca2+ - binding module (FE-hand)". V conference of young scientist of socialist countries on Bioorganic Chemistry, Abstracts, Pushchino (USSR), 1988, 83-84.

  • Urzhumtsev, A.G., Lunin, V.Yu. & Luzyanina, T.B. (1986). "Macromolecular position determination with a noisy synthesis at low resolution". Xth European Cryst. Meeting,Wroclaw, Poland, Coll.Abstr., 1A-01, 51-52.

  • Chirgadze, Yu.N., Nevskaya, N.A., Lunin, V.Yu. & Urzhumtsev, A.G. (1984). "Molecular structure of calf lens protein γ-crystalline at 2.7A resolution". 16-th FEBS Conference, Moscow, 1984, Coll.Abstr., 232.

  • Lunin, V.Yu. & Urzhumtsev, A.G. (1984). "Program construction for refinement of the atomic structure of macromolecules based on the fast differentiation algorithm". Acta Cryst., A40, S, C-18.

  • Lunin, V.Yu., Urzhumtsev, A.G., Chirgadze, Yu.N., Fomenkova, N.P. & Nevskaya, N.A. (1984). "Crystal structure of the calf lens protein gamma-crystallin III". Acta Cryst., A40, S, C-32.

  • Kuzin, A.P. & Urzhumtsev, A.G. (1983). "LSQ-refinement of actinoxanthin structure at 1.8A resolution". All-Union Symp. on Chemistry of Proteins and Peptides, Riga, 1983, Coll. Abstr., 186. (In Russian)

  • Vazina, A.A., Kozlov M.A., Korystova, A.F., Kraizman, V.L., Shelestov, V.M., Vernoslov, S.E. & Lunin V.Yu. (1982). "Methodological aspects of using EXAFS for protein structure determination". The First All-Union Congress on Biophysics, Moscow 1982, Coll.Abstr., III, 215. (In Russian)

  • Fomenkova, N.P., Chirgadze, Yu.N., Sergeev, Yu.V., Nevskaya, N.A., Nikonov, S.V., Lunin, V.Yu. & Urzhumtsev, A.G. (1982). "γ-crystalline structure: the pathway, domains space homology, functional groups". The First All-Union Congress on Biophysics, Moscow 1992, Coll.Abstr., 17. (In Russian)

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