TABLE OF CONTENTS
International Conference
«Mathematical Biology and Bioinformatics»
50 Years of IMPB RAS. Laboratory of Quantum-Mechanical Systems
    Lakhno V.D.
     Proceedings of the International Conference “Mathematical Biology and Bioinformatics”.
     Ed. V.D. Lakhno. Vol. 9. Pushchino: IMPB RAS, 2022. Paper No. e1. doi: 10.17537/icmbb22.34


The IMPB RAS is 50 years old. Laboratory of Macromolecular Crystallography
    Lunin V.Yu.
     Proceedings of the International Conference “Mathematical Biology and Bioinformatics”.
     Ed. V.D. Lakhno. Vol. 9. Pushchino: IMPB RAS, 2022. Paper No. e2. doi: 10.17537/icmbb22.37


The IMPB RAS is 50 years old. Laboratory of Molecular Dynamics
    Balabaev N.K.
     Proceedings of the International Conference “Mathematical Biology and Bioinformatics”.
     Ed. V.D. Lakhno. Vol. 9. Pushchino: IMPB RAS, 2022. Paper No. e3. doi: 10.17537/icmbb22.36


The IMPB RAS is 50 years old. Bioinformatics Laboratory
    Nazipova N.N.
     Proceedings of the International Conference “Mathematical Biology and Bioinformatics”.
     Ed. V.D. Lakhno. Vol. 9. Pushchino: IMPB RAS, 2022. Paper No. e4. doi: 10.17537/icmbb22.35


The IMPB RAS is 50 years old. Laboratory of Data Processing
    Makhortykh S.A.
     Proceedings of the International Conference “Mathematical Biology and Bioinformatics”.
     Ed. V.D. Lakhno. Vol. 9. Pushchino: IMPB RAS, 2022. Paper No. e5. doi: 10.17537/icmbb22.55


The IMPB RAS is 50 years old. Group of Computer Modeling of Nanostructures and Biosystems
    Bystrov V.S.
     Proceedings of the International Conference “Mathematical Biology and Bioinformatics”.
     Ed. V.D. Lakhno. Vol. 9. Pushchino: IMPB RAS, 2022. Paper No. e6. doi: 10.17537/icmbb22.39


50 Years of IMPB RAS. Group of Geomorphometric Modeling
    Florinsky I.V.
     Proceedings of the International Conference “Mathematical Biology and Bioinformatics”.
     Ed. V.D. Lakhno. Vol. 9. Pushchino: IMPB RAS, 2022. Paper No. e7. doi: 10.17537/icmbb22.33


The IMPB RAS is 50 years old. Laboratory of Computational Ecology: achievements and prospects
    Khanina L.G., Ivanova N.V., Shashkov M.P., Smirnov V.E., Romanov M.S., Shanin V.N., Frolov P.V., Glukhova E.M., Bobrovsky M.V.
     Proceedings of the International Conference “Mathematical Biology and Bioinformatics”.
     Ed. V.D. Lakhno. Vol. 9. Pushchino: IMPB RAS, 2022. Paper No. e8. doi: 10.17537/icmbb22.38


POPULATION MODELING

Transition from local bi- and quad-stability to space-time inhomogeneity
    Frisman E.Ya., Kulakov M.P.
     Proceedings of the International Conference “Mathematical Biology and Bioinformatics”.
     Ed. V.D. Lakhno. Vol. 9. Pushchino: IMPB RAS, 2022. Paper No. e9. doi: 10.17537/icmbb22.4


A Stochastic Algorithm for Reaction-Diffusion Model of Communication Processes in Evolving Bacteria
    Maslovskaya A.G., Sarukhanian S.K., Kuttler Ch.
     Proceedings of the International Conference “Mathematical Biology and Bioinformatics”.
     Ed. V.D. Lakhno. Vol. 9. Pushchino: IMPB RAS, 2022. Paper No. e10. doi: 10.17537/icmbb22.49


Dynamics of the macromolecular composition of microalgae culture in natural light conditions. Model
    Lelekov A.S., Shiryaev A.V.
     Proceedings of the International Conference “Mathematical Biology and Bioinformatics”.
     Ed. V.D. Lakhno. Vol. 9. Pushchino: IMPB RAS, 2022. Paper No. e11. doi: 10.17537/icmbb22.5


Mathematical Modeling of Development Scenarios of Plankton Community During Evolution
    Neverova G.P., Zhdanova O.L.
     Proceedings of the International Conference “Mathematical Biology and Bioinformatics”.
     Ed. V.D. Lakhno. Vol. 9. Pushchino: IMPB RAS, 2022. Paper No. e12. doi: 10.17537/icmbb22.23


On the Role of Natural Selection in the Genetic Divergence of Migration-Coupled Populations: Comparison of Experimental and Mathematical Modelling Results
    Zhdanova O.L., Frisman E.Ya.
     Proceedings of the International Conference “Mathematical Biology and Bioinformatics”.
     Ed. V.D. Lakhno. Vol. 9. Pushchino: IMPB RAS, 2022. Paper No. e13. doi: 10.17537/icmbb22.8


A Model of Competition between Two Populations, Taking into Account Their Structurality
    Belotelov N.V., Brovko A.V.
     Proceedings of the International Conference “Mathematical Biology and Bioinformatics”.
     Ed. V.D. Lakhno. Vol. 9. Pushchino: IMPB RAS, 2022. Paper No. e14. doi: 10.17537/icmbb22.29


MATHEMATICAL MODELS OF NANOSTRUCTURES AND BIOMOLECULES. MATHEMATICAL FOUNDATIONS OF NANOBIOELECTRONICS

Demonstration of the Elements of Bloch Oscillations of a Polaron during Its Uniform Motion along the Chain
    Korshunova A.N., Lakhno V.D.
     Proceedings of the International Conference “Mathematical Biology and Bioinformatics”.
     Ed. V.D. Lakhno. Vol. 9. Pushchino: IMPB RAS, 2022. Paper No. e15. doi: 10.17537/icmbb22.9


Search for the evaporation temperature of OH ions from hydroxyapatite
    Likhachev I.V., Balabaev N.K., Bystrov V.S.
     Proceedings of the International Conference “Mathematical Biology and Bioinformatics”.
     Ed. V.D. Lakhno. Vol. 9. Pushchino: IMPB RAS, 2022. Paper No. e16. doi: 10.17537/icmbb22.11


Disrupting of a polaron with different thermostat simulations
    Fialko N.S., Olshevets M.M., Lakhno V.D.
     Proceedings of the International Conference “Mathematical Biology and Bioinformatics”.
     Ed. V.D. Lakhno. Vol. 9. Pushchino: IMPB RAS, 2022. Paper No. e17. doi: 10.17537/icmbb22.16


Photoelectronic properties of diphenylalanine peptide nanotubes
    Bystrov V.S., Paramonova E.V., Zelenovsky P.S., Fridkin V.M., Lin T., Shen H., Meng X.
     Proceedings of the International Conference “Mathematical Biology and Bioinformatics”.
     Ed. V.D. Lakhno. Vol. 9. Pushchino: IMPB RAS, 2022. Paper No. e18. doi: 10.17537/icmbb22.24


Modeling and computational research of the Hydroxyapatite properties
    Bystrov V.S., Paramonova E.V., Likhachev I.V., Filippov S.V., Bystrova A.V., Avakyan L.A., Tolchina D.B., Makarova S.V., Isaev D.D., Bulina N.V.
     Proceedings of the International Conference “Mathematical Biology and Bioinformatics”.
     Ed. V.D. Lakhno. Vol. 9. Pushchino: IMPB RAS, 2022. Paper No. e19. doi: 10.17537/icmbb22.25


Analysis of properties of loci in the multiparameter space of the quantum-classical model of rhodopsin photoisomerization
    Shigaev A.S., Lihachev I.V., Lakhno V.D.
     Proceedings of the International Conference “Mathematical Biology and Bioinformatics”.
     Ed. V.D. Lakhno. Vol. 9. Pushchino: IMPB RAS, 2022. Paper No. e20. doi: 10.17537/icmbb22.56


On the Conformational Preferences of 2-Selenouridine and its Derivatives
    Pal R., Mishra S., Lahiri A.
     Proceedings of the International Conference “Mathematical Biology and Bioinformatics”.
     Ed. V.D. Lakhno. Vol. 9. Pushchino: IMPB RAS, 2022. Paper No. e21. doi: 10.17537/icmbb22.20


Contribution of half-site spacing in bZIP-DNA recognition
    Sarkar A.K., Sarkar A., Lahiri A.
     Proceedings of the International Conference “Mathematical Biology and Bioinformatics”.
     Ed. V.D. Lakhno. Vol. 9. Pushchino: IMPB RAS, 2022. Paper No. e22. doi: 10.17537/icmbb22.17


Methods for calculating the chirality of secondary and supersecondary protein structures
    Sidorova A.E., Lutsenko A.O., Shpigun D.K.
     Proceedings of the International Conference “Mathematical Biology and Bioinformatics”.
     Ed. V.D. Lakhno. Vol. 9. Pushchino: IMPB RAS, 2022. Paper No. e23. doi: 10.17537/icmbb22.32


BIOINFORMATICS AND COMPUTER BIOMEDICINE

Bioinformatics study of the family of bacterial ribosomal proteins S1: features of structural organization, amyloidogenic regions in S1 domains, evolution of bacterial phyla, creation of new antibacterial peptides
    Galzitskaya O.V., Machulin A.V., Deryusheva E.I., Panfilov A.V., Surin A.A., Kravchenko S.V., Glyakina A.V., Grishin S.Y.
     Proceedings of the International Conference “Mathematical Biology and Bioinformatics”.
     Ed. V.D. Lakhno. Vol. 9. Pushchino: IMPB RAS, 2022. Paper No. e24. doi: 10.17537/icmbb22.14


Identification of Virus Taxonomic Position with The Help of Targeted Analysis of Viral Genome
    Chaley M.B., Kutyrkin V.A.
     Proceedings of the International Conference “Mathematical Biology and Bioinformatics”.
     Ed. V.D. Lakhno. Vol. 9. Pushchino: IMPB RAS, 2022. Paper No. e25. doi: 10.17537/icmbb22.3


Interaction of tricyclic antidepressants with the NMDA receptor according to computer simulation data
    Belinskaia D.A., Shestakova N.N.
     Proceedings of the International Conference “Mathematical Biology and Bioinformatics”.
     Ed. V.D. Lakhno. Vol. 9. Pushchino: IMPB RAS, 2022. Paper No. e26. doi: 10.17537/icmbb22.6


A Study of the Stability of 3β-Corner Structural Motifs
    Rudnev V.R., Nikolsky K.S., Petrovsky D.V., Kulikova L.I., Kaysheva A.L., Efimov A.V.
     Proceedings of the International Conference “Mathematical Biology and Bioinformatics”.
     Ed. V.D. Lakhno. Vol. 9. Pushchino: IMPB RAS, 2022. Paper No. e27. doi: 10.17537/icmbb22.30


Phylogenetic analysis of the lubricin protein and surfactant-associated proteins B and C
    Tretyakova A.V., Gerasimova E.O., Krylov P.A., Novochadov V.V.
     Proceedings of the International Conference “Mathematical Biology and Bioinformatics”.
     Ed. V.D. Lakhno. Vol. 9. Pushchino: IMPB RAS, 2022. Paper No. e28. doi: 10.17537/icmbb22.18


Bioinformatic analysis of structural and functional properties of proteins of the surface zone and surfactant-associated proteins
    Gerasimova E.O., Tretyakova A.V., Krylov P.A.
     Proceedings of the International Conference “Mathematical Biology and Bioinformatics”.
     Ed. V.D. Lakhno. Vol. 9. Pushchino: IMPB RAS, 2022. Paper No. e29. doi: 10.17537/icmbb22.21


Bioinformatic analysis of a new class III bacteriocin from L. fermentum 3872
    Machulin A.V., Deryusheva E.I., Abramov V.M., Kosarev I.V., Karlyshev A.V.
     Proceedings of the International Conference “Mathematical Biology and Bioinformatics”.
     Ed. V.D. Lakhno. Vol. 9. Pushchino: IMPB RAS, 2022. Paper No. e30. doi: 10.17537/icmbb22.15


Study of the mechanism of reactions catalyzed by complexes of cytochrome C with cardiolipin
    Levchenko I.N., Vladimirov G.K., Volodyaev I.V.
     Proceedings of the International Conference “Mathematical Biology and Bioinformatics”.
     Ed. V.D. Lakhno. Vol. 9. Pushchino: IMPB RAS, 2022. Paper No. e31. doi: 10.17537/icmbb22.19


Mathematical modeling of quantum yields of chemiluminescence activated by coumarin C-525 under the action of a complex of cytochrome C with cardiolipin
    Levchenko I.N., Volodyaev I.V., Vladimirov G.K., Boyarchenkov A.S.
     Proceedings of the International Conference “Mathematical Biology and Bioinformatics”.
     Ed. V.D. Lakhno. Vol. 9. Pushchino: IMPB RAS, 2022. Paper No. e32. doi: 10.17537/icmbb22.22


Long Direct Repeats in Bacterial Chromosomes
    Panyukov V.V., Ozoline O.N., Kiselev S.S.
     Proceedings of the International Conference “Mathematical Biology and Bioinformatics”.
     Ed. V.D. Lakhno. Vol. 9. Pushchino: IMPB RAS, 2022. Paper No. e33. doi: 10.17537/icmbb22.46


Bioinformatic search and formation of a panel of serum albumin ligands that modulate its interaction with Aβ-peptide
    Deryusheva E.I., Nemashkalova E.L, Shevelyova M. P., Litus E.A.
     Proceedings of the International Conference “Mathematical Biology and Bioinformatics”.
     Ed. V.D. Lakhno. Vol. 9. Pushchino: IMPB RAS, 2022. Paper No. e34. doi: 10.17537/icmbb22.1


Optical properties of Luteolin: DFT study
    Delgado E., Deriabina A., Vazquez G.D., Prutskij T., Gonzalez E., Poltev V.
     Proceedings of the International Conference “Mathematical Biology and Bioinformatics”.
     Ed. V.D. Lakhno. Vol. 9. Pushchino: IMPB RAS, 2022. Paper No. e35. doi: 10.17537/icmbb22.27


Aho-Corasick automaton minimization. Application to the computation of pattern occurrences P-value
    Furletova E.I.
     Proceedings of the International Conference “Mathematical Biology and Bioinformatics”.
     Ed. V.D. Lakhno. Vol. 9. Pushchino: IMPB RAS, 2022. Paper No. e36. doi: 10.17537/icmbb22.54


METHODS FOR PROCESSING BIOMEDICAL DATA

Particle diameter, phase composition, surface area and film thickness of copper nanoparticles as predictors of antibacterial activity
    Kudryashova N.O., Zhigach A.N., Zhudenkov K.V., Glushchenko N.N.
     Proceedings of the International Conference “Mathematical Biology and Bioinformatics”.
     Ed. V.D. Lakhno. Vol. 9. Pushchino: IMPB RAS, 2022. Paper No. e37. doi: 10.17537/icmbb22.52


Vascular endothelial growth factor (VEGF-A165): association with diseases, structure modelling and comparison with the experimental data
    Nemashkalova E.L, Shevelyova M. P., Deryusheva E.I.
     Proceedings of the International Conference “Mathematical Biology and Bioinformatics”.
     Ed. V.D. Lakhno. Vol. 9. Pushchino: IMPB RAS, 2022. Paper No. e38. doi: 10.17537/icmbb22.2


Analysis of pharmacological data using mathematical modeling approach
    Yakovleva T.A.
     Proceedings of the International Conference “Mathematical Biology and Bioinformatics”.
     Ed. V.D. Lakhno. Vol. 9. Pushchino: IMPB RAS, 2022. Paper No. e39. doi: 10.17537/icmbb22.51


Multimodal Clustering in the Data Analysis of Myocardial Infarction Complicationsà
    Bogatyrev M.Y., Shestaka T.V.
     Proceedings of the International Conference “Mathematical Biology and Bioinformatics”.
     Ed. V.D. Lakhno. Vol. 9. Pushchino: IMPB RAS, 2022. Paper No. e40. doi: 10.17537/icmbb22.45


On Spectral Analysis of the Regulation of the Main Cardiac Rhythm
    Moskalenko A.V., Makhortykh S.A.
     Proceedings of the International Conference “Mathematical Biology and Bioinformatics”.
     Ed. V.D. Lakhno. Vol. 9. Pushchino: IMPB RAS, 2022. Paper No. e41. doi: 10.17537/icmbb22.13


The statistical approach to the solution of inverse electrocardiography problem
    Polosin V.G.
     Proceedings of the International Conference “Mathematical Biology and Bioinformatics”.
     Ed. V.D. Lakhno. Vol. 9. Pushchino: IMPB RAS, 2022. Paper No. e42. doi: 10.17537/icmbb22.10


Review of mathematical modeling of thymocytes dynamics approaches
    Kulesh V.S.
     Proceedings of the International Conference “Mathematical Biology and Bioinformatics”.
     Ed. V.D. Lakhno. Vol. 9. Pushchino: IMPB RAS, 2022. Paper No. e43. doi: 10.17537/icmbb22.53


Modern Theories of Consciousness, Materialistic Macroscopic
    Mazurov M.E.
     Proceedings of the International Conference “Mathematical Biology and Bioinformatics”.
     Ed. V.D. Lakhno. Vol. 9. Pushchino: IMPB RAS, 2022. Paper No. e44. doi: 10.17537/icmbb22.7


COMPUTATIONAL ECOLOGY

Experience of using the DeepForest neural network to detect trees in a broad-leaved forest
    Portnov A.M., Ivanova N.V., Shashkov M.P.
     Proceedings of the International Conference “Mathematical Biology and Bioinformatics”.
     Ed. V.D. Lakhno. Vol. 9. Pushchino: IMPB RAS, 2022. Paper No. e45. doi: 10.17537/icmbb22.12


Effects of mass windthrow in broad-leaved forest on characteristics of sandy and loamy soils
    Khanina L.G., Bobrovsky M.V., Smirnov V.E.,Ivashchenko K.V., Zhuravleva A.I., Zhmaylov I.V.
     Proceedings of the International Conference “Mathematical Biology and Bioinformatics”.
     Ed. V.D. Lakhno. Vol. 9. Pushchino: IMPB RAS, 2022. Paper No. e46. doi: 10.17537/icmbb22.50­


Diversity of fungal and bacterial communities and dynamics of physicochemical treats of wood of broad-leaved tree species and European spruce during decomposition after a mass windthrow
    Khanina L., Volobuev S., Smirnov V., Tutukina M., Shelyakin P., Bobrovsky M.
     Proceedings of the International Conference “Mathematical Biology and Bioinformatics”.
     Ed. V.D. Lakhno. Vol. 9. Pushchino: IMPB RAS, 2022. Paper No. e47. doi: 10.17537/icmbb22.48


Analysis of Steller's Sea Eagle reproduction efficiency on Sakhalin Island using Generalized Linear Mixed Models (GLMM)
    Romanov M.S., Masterov V.B.
     Proceedings of the International Conference “Mathematical Biology and Bioinformatics”.
     Ed. V.D. Lakhno. Vol. 9. Pushchino: IMPB RAS, 2022. Paper No. e48. doi: 10.17537/icmbb22.47


METHODS OF GEOMORPHOMETRY

Geomorphometric Modeling of Nanotopography Using Data from Atomic Force Microscopy
    Dedkova A.A., Florinsky I.V.
     Proceedings of the International Conference “Mathematical Biology and Bioinformatics”.
     Ed. V.D. Lakhno. Vol. 9. Pushchino: IMPB RAS, 2022. Paper No. e49. doi: 10.17537/icmbb22.26