The online journal "Mathematical biology and bioinformatics": ways and prospects
Lakhno V.D., Ustinin M.N., Nazipova N.N.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e1. doi: 10.17537/icmbb18.112
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MATHEMATICAL BASES OF NANOBIOELECTRONICS |
Evolution of electron energy under trapping by mobile discrete breathers in DNA with fixed ends
Lakhno V.D., Sergeev K.S., Chetverikov A.P.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e2. doi: 10.17537/icmbb18.86
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Modeling of charge transfer in heterogeneous oligonucleotides at a biologically significant temperature
Fialko N.S., Lakhno V.D.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e3. doi: 10.17537/icmbb18.64
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Various regimes of charge transfer in a Holstein chain in a constant electric field depending on its intensity and the initial charge distribution
Korshunova A.N., Lakhno V.D.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e4. doi: 10.17537/icmbb18.89
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Comparison of quantum-classical model of rhodopsin photoisomerization with a quantum-mechanical model approach of Hahn and Stock
Shigaev A.S., Feldman T.B., Nadtochenko V.A., Lakhno V.D.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e5. doi: 10.17537/icmbb18.59
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Modeling of charge transfer in «donor – homogeneous bridge – acceptor» chains at T = 300 K
Fialko N.S., Lakhno V.D.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e6. doi: 10.17537/icmbb18.58
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Nucleation length of denaturation bubble in Peyrard–Bishop–Dauxois model and its modifications
Geraskin E.I., Chetverikov A.P., Shigaev A.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e7. doi: 10.17537/icmbb18.87
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Charge transport in a homogeneous molecular polynucleotide chain excited by initial displacements and velocities of nucleotide pair
Korshunova A.N., Lakhno V.D.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e8. doi: 10.17537/icmbb18.46
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Modeling of polaron and bipolaron states in one-dimensional systems
Kashirina N.I., Korol O.A., Lakhno V.D.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e62. doi: 10.17537/icmbb18.84
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Physical ferroelectric and chiral properties of various dipeptide nanotubes and nanostructures
Bystrov V.S., Bdikin I.K., Tverdislov V.A., Zhulyabina O.A., Zelenovskiy P.S., Kopyl S.A.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e9. doi: 10.17537/icmbb18.4
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Polaron in constant electric field. Generation of coherent lattice vibrations
Astakhova T.Yu., Vinogradov G.A.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e10. doi: 10.17537/icmbb18.61
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On the optimal integration step in the numerical experiments on the charge dynamics in heterogeneous DNA
Pyatkov M.I., Zaytsev A.Y., Olshevets M.M., Fialko N.S.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e11. doi: 10.17537/icmbb18.65
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Implementation of partially automated calculations on hybrid supercomputers in the modeling of charge transfer in quasi-one-dimensionalmolecular chains
Pyatkov M.I., Zaytsev A.Y., Olshevets M.M., Fialko N.S.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e12. doi: 10.17537/icmbb18.66
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MATHEMATICAL BIOPHYSICS |
Biophysical meaning of integral vector-cardiographic parameters
Aidu E.A.I., Trunov V.G.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e13. doi: 10.17537/icmbb18.49
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Linguistic analysis of human heart rate and 15 types of its Poincare plots
Cherkay A.D., Vlasov Yu.A.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e14. doi: 10.17537/icmbb18.29
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Quantization of instantaneous heart rhythm phase space
Kudinov A.N., Mikheev S.A., Tsvetkov V.P., Tsvetkov I.V.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e15. doi: 10.17537/icmbb18.21
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Tornadoes in the heart: their self-organization
Mazurov M.E., Gorodkov A.Yu., Kiknadze G.I.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e16. doi: 10.17537/icmbb18.11
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Laser-Doppler flow (LDF) and Heart rate intervals (R-R) as stochastic processes
Kislukhin V.V, Kislukhina E.V.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e17. doi: 10.17537/icmbb18.9
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The influence of active contractions on stress distribution in the wall of aresistance blood vessel
Shadrina N.Kh.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e18. doi: 10.17537/icmbb18.19
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Mathematical modeling of the metabolic activity of an isolated perfused rat liver under reduced oxygenation of the perfusion medium
Shadrin K.V., Pakhomova V.G., Kryukova O.V., Rupenko A.P.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e19. doi: 10.17537/icmbb18.36
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Mathematical modeling of the ryanodine receptor’s activation time dependence on magnesium
Iaparov B.I., Ivchenko V.V.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e20. doi: 10.17537/icmbb18.69
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Effect of 2-thiouridine on RNA conformation
Sarkar A.K., Sarzynska J., Lahiri A.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e21. doi: 10.17537/icmbb18.70
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Plant antibacterial peptides and their possible oligomerization
Dutta Ch.S., Glyakina A.V., Lahiri A., Galzitskaya O.V.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e22. doi: 10.17537/icmbb18.73
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Models of human heart and torso electrophysiology verified against clinical data
Ushenin K.S., Dokuchaev A., Magomedova S.M., Sopov O.V., Kalinin V.V., Solovyova O.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e23. doi: 10.17537/icmbb18.41
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Instability interactions of blood vessel
Kuzin A.A., Kuzin R.A., Timerbulatov Sh.V.,Ulemaeva S.A., Khakimov A.G.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e24. doi: 10.17537/icmbb18.16
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Kramers rate theory as a starting point for modeling temperature effects in TRP channels
Okenov A.O., Iaparov B.Ya., Moskvin A.S.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e25. doi: 10.17537/icmbb18.38
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The application of a distributed model of active mediafor the analysis of the development of urban ecosystems
Sidorova A.E., Levashova N.T., Semina A.E.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e26. doi: 10.17537/icmbb18.94
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Biosphere as a hierarchy of active media. Aspects of self-organization
Sidorova A.E., Tverdislov V.A.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e27. doi: 10.17537/icmbb18.95
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On the prospects of using the SpecML language for mathematical modeling in cardiophysics
Tetuev R.K., Moskalenko A.V., Alyoshin S.A., Makhortykh S.A.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e28. doi: 10.17537/icmbb18.22
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Brownian dynamics simulation of intra-cellular charge transfer processes using Julia programming language for scientific computing
Ustinin D.M.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e29. doi: 10.17537/icmbb18.93
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NEURAL NETWORKS: THEORY AND APPLICATION |
Dynamics of propagation of a nerve impulse: new details of an old problem
Mornev O.A., Lysikova T.A.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e30. doi: 10.17537/icmbb18.103
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Coding in formation in impulsive selective neural networks
Mazurov M.E.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e31. doi: 10.17537/icmbb18.26
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Teaching selective neural networks without mathematics and without a teacher based on self-organization
Mazurov M.E.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e32. doi: 10.17537/icmbb18.28
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Modeling the metabolic overrestoration mechanism during the neuronal activity
Krylov A.R.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e33. doi: 10.17537/icmbb18.78
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METHODS OF ANALYSIS OF BIOLOGICAL AND MEDICAL DATA |
Processing huge sets of experimental data with spectral multi-exponential approximation
Khruschev S.S., Plyusnina T.Yu.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e34. doi: 10.17537/icmbb18.14
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Evaluation of morphometric parameters of the human body surface by biophotogrammetric data
Skrypitsyna T.N., Spiridonova E.E.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e35. doi: 10.17537/icmbb18.39
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Optimal valid partitioning method in task of evaluating effect of hemoglobin oxygenation levels vessel endothelial growth factor
Senko O.V., Kodryan M.S., Kuznetsova A.V., Klimenko L.L.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e36. doi: 10.17537/icmbb18.50
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Software for the analysis of magnetic encephalography data by the method of virtual electrodes
Rykunova E.D., Rykunov S.D., Boyko A.I., Ustinin M.N.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e37. doi: 10.17537/icmbb18.91
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Spectral features of encephalograms observed in psychic disorders
Pankratova N.M., Rykunov S.D., Ustinin M.N.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e38. doi: 10.17537/icmbb18.51
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Methods of localization of the spectral features of the encephalograms in psychic disorders
Ustinin M.N., Rykunov S.D., Pankratova N.M., Boyko A.I., Molchanova D.A.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e39. doi: 10.17537/icmbb18.52
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Encephalography data handling software
Oplachko E.S., Rykunov S.D., Ustinin M.N.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e40. doi: 10.17537/icmbb18.90
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Spherical harmonics application for EEG sources analyses in the presence of noise
Lyzhko E.V., Makhortykh S.A.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e41. doi: 10.17537/icmbb18.102
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Modeling of biological tissues based on 3D reconstruction technology
Polyakov M.V., Khoperskov A.V., Novochadov V.V., Terpilovskiy A.A., Tiras K.P.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e42. doi: 10.17537/icmbb18.79
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Methods of working with dynamic molecular models, built in an environment of open 3D editor Blender
Filippov S.V.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e43. doi: 10.17537/icmbb18.62
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Parallelism of different levels in the program of molecular dynamics simulation PUMA-CUDA
Likhachev I.V., Balabaev N.K.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e44. doi: 10.17537/icmbb18.53
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Method of constructing dynamic molecular models within the environment of the Blender open 3D platform exemplified by β2-adrenergic receptor
Filippov S.V., Sivozhelezov V.S.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e45. doi: 10.17537/icmbb18.23
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MATHEMATICAL MODELING OF COMPOSITE MATERIALS |
Computer modeling and studies of the polymer ferroelectrics/graphene nano-composites
Bystrov V.S., Bdikin I.K., Silibin M.V., Karpinsky D.V., Meng X.J., Lin T., Tian B.B., Wang J.L., Bystrova A.V., Paramonova E.V.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e46. doi: 10.17537/icmbb18.3
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Defects in Hydroxyapatite: structure and properties, calculations from the first principles
Bystrov V.S., Paramonova E.V., Avakyan L.A., Coutinho J., Bystrova A.V.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e47. doi: 10.17537/icmbb18.1
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Density functional study of magnetic substitutions in hydroxyapatite
Paramonova E.V., Avakyan L.A., Coutinho J., Bystrov V.S.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e48. doi: 10.17537/icmbb18.83
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Reactive force-field molecular dynamic models of iron/oxide/carbon nanocomposites designed for magnetic hyperthermia
Avakyan L.A., Manukyan A.S., Paramonova E.V., Bogdan A.S., Sukharina G.S., Sharoyan E.G., Bugaev L.A.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e49. doi: 10.17537/icmbb18.42
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BIOINFORMATICS |
Creation of a web-server for de novo genome assembly on the basis of combining the results obtained by various assemblers
Romanenkov K.V., Tyulbasheva G.E., Ustinin M.N., Nazipova N.N.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e50. doi: 10.17537/icmbb18.104
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Searching for patterns of association between functional genomic elements
Matkarimov O.O., Polivoda D.E., Poptsova M.S.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e51. doi: 10.17537/icmbb18.82
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Recognition of latent periodicity in DNA sequences basedon stochastic models of encoding
Kutyrkin V.A., Chaley M.B.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e52. doi: 10.17537/icmbb18.8
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Specifics of coding sequences in the flavivirus genomes
Chaley M.B., Tyulko Zh.S., Kutyrkin V.A.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e53. doi: 10.17537/icmbb18.10
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Conceptual approach to clustering in the study of gene expression
Bogatyrev M.Y., Samodurov K.V.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e54. doi: 10.17537/icmbb18.81
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The study of metagenomes of oceanic microbiota
Zimin A.A., Nazipova N.N.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e55. doi: 10.17537/icmbb18.105
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Local impact of amino acid substitution on the antigenicity of the influenza virus
Forghani M.A., Khachay M.Y.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e56. doi: 10.17537/icmbb18.107
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Recognition and study of helical pairs in protein molecules
Tikhonov D.A., Kulikova L.I., Rudnev V.R., Efimov A.V.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e57. doi: 10.17537/icmbb18.60
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Database of structural motifs of protein molecules and computer services for their analysis
Rudnev V.R., Tikhonov D.A., Kulikova L.I., Gubin M.Yu., Efimov A.V.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e58. doi: 10.17537/icmbb18.88
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Using of k-mers for intraspecific bacterial phylotyping
Kiselev S.S., Ozoline O.N., Panyukov V.V.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e59. doi: 10.17537/icmbb18.101
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The distribution of RNA recognizing protein sites for long genes on chromosome 15 of Homo sapiens
Fedoseyeva V.B., Zharinova I.A., Alexandrov A.A.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e60. doi: 10.17537/icmbb18.48
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A/T-tracks domination problem in the human genome
Komarov V.M., Samchenko A.A., Kondratiev M.S.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e103. doi: 10.17537/icmbb18.114
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Machine learning for Mg2+-binding sites prediction in RNA structures
Baulin E., Tikhonova P., Roytberg M.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e61. doi: 10.17537/icmbb18.35
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Identification of antimicrobial peptides in Lycopersicon esculentum genome
Kovtun A.S., Istomina E.A., Slezina M.P., Odintsova T.I.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e63. doi: 10.17537/icmbb18.13
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Distributed realization of parallel algorithm for global alignment of long sequences
Pankratov A.N., Tetuev R.K., Pyatkov M.I.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e64. doi: 10.17537/icmbb18.92
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Classification of DNA complexes of homeodomain and zinc-finger protein families: statistical analysis of DNA structures in interfaces of homeodomain-DNA complexes
Grokhlina T.I., Panchenko L.A., Polozov R.V., Sivozhelezov V.S., Ivanov V.V.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e65. doi: 10.17537/icmbb18.98
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MATHEMATICAL MODELS OF BIOLOGICAL PROCESSES AND STRUCTURES OF BIOMOLECULES |
Models of cellular and molecular regulation of the photosynthetic chain of hydrogen-producing microalgae
Riznichenko G.Yu., Diakonova A.N., Kovalenko I.B., Plyusnina T.Yu., Khruschev S.S., Fyodorov V.A.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e66. doi: 10.17537/icmbb18.25
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One genotype → two phenotypes: “neutrally coupled coevolution”and the origin of “persister cells”
Likhoshvai V.A., Khlebodarova T.M.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e67. doi: 10.17537/icmbb18.5
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On the chaotic potential of the local translation at activated synapses
Khlebodarova T.M., Kogai V.V., Likhoshvai V.A.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e68. doi: 10.17537/icmbb18.6
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Moleculargenetic mechanisms of membrane potential formation in Escherichia coli at stationary growth on nitrite
Ree N.A., Khlebodarova T.M., Likhoshvai V.A.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e69. doi: 10.17537/icmbb18.18
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Simulation of the evolution of metabolism amplification and reduction in prokaryotes inhabiting spatially heterogeneous environments
Klimenko A.I., Mustafin Z.S., Lashin S.A., MatushkinYu.G.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e70. doi: 10.17537/icmbb18.15
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Mathematical models of evolution for replicator systems: fitness landscape adaptation
Bratus A.S., Yakushkina T., Drozhzhin S., Samokhin I.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e71. doi: 10.17537/icmbb18.54
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Model for stacking actin monomers in fibrils
Glyakina A.V., Surin A.K., Galzitskaya O.V.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e72. doi: 10.17537/icmbb18.76
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Addressing BACE1 flexibility to identify inhibitors for Alzheimer’s Disease therapeutics
Das S., Basu S.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e73. doi: 10.17537/icmbb18.72
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Conformational change in the cataliticcenter of the 4SER chimera cathepsin-L: molecular dynamics simulations and ab initio study
Izotova E.D., Bagaeva T.V.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e74. doi: 10.17537/icmbb18.45
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Hydrogen bonds and local ordering of water molecules
Teplukhin A.V.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e75. doi: 10.17537/icmbb18.34
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Determination of the order of A–B transition in DNA molecule in theframework of a coarse-grain modelè
Kovaleva N.A., Zubova E.A.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e76. doi: 10.17537/icmbb18.31
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Theoretical analysis of the mechanism of microtubule rescue due to embedded GTP islands
Zaitsev À.V., Mustyatsa V.V., Gudimchuk N.B.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e77. doi: 10.17537/icmbb18.37
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Kinetic model of microtubule dynamics with using curved conformation of tubulin
Vinogradov D.S., Ulyanov E.V., Gudimchuk N.B.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e78. doi: 10.17537/icmbb18.27
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Computer model of tubulin microtubules assembly with curved protofilamentsat the tip
Ulyanov E.V., Vinogradov D.S., Ataullakhanov F.I., Gudimchuk N.B.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e79. doi: 10.17537/icmbb18.32
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In Silico modeling of microtubule tip dynamics and structure
Mustyatsa V., Kostarev A., Tvorogova A., Ataullakhanov F., Vorobjev I., Gudimchuk N.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e80. doi: 10.17537/icmbb18.40
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Chiral dualism, arrow of symmetry and molecular machines
Tverdislov V.A., Malyshko E.V.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e81. doi: 10.17537/icmbb18.97
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Quantitative approach to the assessment of chirality in hierarchies of protein structures
Sidorova A.E., Tverdislov V.A., Levashova N.T., Kotov A.R., Ustinin M.N.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e82. doi: 10.17537/icmbb18.96
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Search for a spacer for immobilization of organophosphates with the streptavidin-biotin system using computer simulations
Belinskaia D.A., Goncharov N.V.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e83. doi: 10.17537/icmbb18.12
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The role of electrostatic interactions in the binding of psychotropic drugs to NMDA receptor according to computer simulation
Shestakova N.N., Barygin O.I., Belinskaia D.A.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e84. doi: 10.17537/icmbb18.57
|
POPULATION MODELING |
Dynamics of satellite population related species with cyclic dynamics
Frisman E.Ya., Shlufman K.V., Neverova G.P.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e85. doi: 10.17537/icmbb18.68
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Modeling the dynamics of the predator-prey community, taking into account the age structure of the interacting species
Zhdanova O.L., Neverova G.P., Frisman E.Ya.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e86. doi: 10.17537/icmbb18.56
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Changes in dynamics of a structured population size due to age specific harvest
Neverova G.P., Frisman E.Ya.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e87. doi: 10.17537/icmbb18.71
|
Dynamic modes of structured population under sex- and age- specific harvest
Revutskaya O.L., Neverova G.P., Frisman E.Ya.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e88. doi: 10.17537/icmbb18.67
|
Spatial-temporal structures in the active predator-passive prey model
Zagrebneva A.D., Govorukhin V.N.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e89. doi: 10.17537/icmbb18.33
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Group dynamics in the agent model of the population
Belotelov N.V., Konovalenko I.A., Nazarova V.M.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e90. doi: 10.17537/icmbb18.109
|
COMPUTATIONAL ECOLOGY |
The generic envelope test and its modifications
Grabarnik P., Myllymaki M.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e91. doi: 10.17537/icmbb18.111
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On the morphological source of divergence of (coniferous) tree species. Model analysis
Galitskii V.V.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e92. doi: 10.17537/icmbb18.44
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Algorithm for constructing networks of species interaction in communities based on the results of environmental monitoring studies
Bukin Yu.S., Mikhailov I.S., Cherkashin E.A.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e93. doi: 10.17537/icmbb18.24
|
Measuring methane flux from the soil by inverse modeling using adjoint equations
Sabrekov A.F., Glagolev M.V., Terentieva I.E.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e94. doi: 10.17537/icmbb18.85
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Identification of soil methane oxidation activity by inverse modeling
Sabrekov A.F., Glagolev M.V., Terentieva I.E., Mochenov S.Y.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e95. doi: 10.17537/icmbb18.77
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Analysis of spatiotemporal data to assess the influence of grass fires on the vegetation in abandoned agricultural lands
Khanina L.G., Smirnov V.E., Bykhovets S.S., Romanov M.S., Bobrovsky M.V.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e96. doi: 10.17537/icmbb18.108
|
Modeling of the steller’s sea eagle population: stable demographic structure vs. transient dynamics
Romanov M.S., Masterov V.B.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e97. doi: 10.17537/icmbb18.99
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Standards and tools for data publishing through international biodiversity portals
Shashkov M.P., Ivanova N.V.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e98. doi: 10.17537/icmbb18.55
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New version of the 3-PG model of biomass production for the most common tree species in European Russia
Shanin V.N., Grabarnik P.Ya., Bykhovets S.S., Chertov O.G., Shashkov M.P., Ivanova N.V., Stamenov M.N., Frolov P.V.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e99. doi: 10.17537/icmbb18.47
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Modeling the population dynamics of protected lichen species Lobaria pulmonaria at different forest management scenarios in even-aged pure stands in Kostroma region
Ivanova N.V., Shanin V.N., Shashkov M.P.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e100. doi: 10.17537/icmbb18.20
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Analysis of the initial dynamics of the pine growth in the (Pinus sylvestris L.) plantations in South of Moscow region
Priputina I.V., Frolova G.G.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e101. doi: 10.17537/icmbb18.110
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Statistical analysis of the mycorrhizae impact on communities of alpine meadows
Farish N.R., Lavrenov N.G.
Proceedings of the International Conference "Mathematical Biology and Bioinformatics".
Ed. V.D. Lakhno. Vol. 7. Pushchino: IMPB RAS, 2018. Paper No. e102. doi: 10.17537/icmbb18.106
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