Input data.
Reads:
- RdsFi = file of standard FASTA sequence lines,
one line = one read.
Sequence:
- SqFi = file in standard FASTA sequence format.

This program, PrMapMis3MatcherPos.exe, maps ALL occurrences
of each read from RdsFi to the SqFi genome with a specified 
number of mismatches misNu=0,1,2,3.
Condition: Reads with lengths outside the interval [12,1024] are ignored.

Example: Let read X be included in a genome strand mapped to fragment F.
When misNu=0, read X matches fragment F of strand.
When misNu=3, read X may either match fragment F or have a certain number, 
from one to three, of mismatches with the strand fragment F.
For read X, the program reports both the mapping position and the mapping accuracy.

To run the program:
- specify the input parameters;
- click the red buttons;
- click the "go" button.

Four output files:

{mz reports the number of mismatches equal to z}
- RdsFi_SqFi_mzRdsInPos.txt - reads included in the genome;
- RdsFi_SqFi_mzRdsOutPos.txt - reads NOT included in the genome;
- RdsFi_SqFi_mzMapRdsPos.txt - read positions in the genome;
- RdsFi_SqFi_mzMapRds_Log.txt - statistics

