Structure

Laboratory of Macromolecular Crystallography


Publications by N.L.Lunina

At 2003, January 01

The full texts of papers, preprints and theses may be found here.

Crystallographic papers

Papers in journals

  • Lunin, V.Y., Lunina, N.L., Ritter, S., Frey, I., Berg, A., Diderichs, K., Podjarny, A.D., Urzhumtsev, A. & Baumstark M.W. (2001). "Low-resolution data analysis for low-density lipoprotein particle". Acta Cryst., D57, 108-121.

  • Lunin V.Y., Lunina N.L. & Urzhumtsev A.G. (2000). "Connectivity properties of high-density regions and ab initio phasing at low resolution". Acta Cryst. A56, 375-382.

  • Lunin V.Y., Lunina N.L., Petrova T.E., Skovoroda T.P., Urzhumtsev A.G. & Podjarny A.D. (2000). "Low-resolution ab initio phasing: problems and advances". Acta Cryst. D56, 1223-1232.

  • Urzhumtsev A.G., Lunina N.L., Skovoroda T.P., Podjarny A.D. & Lunin V.Y. (2000). "Density constraints and low-resolution phasing". Acta Cryst. D56, 1233-1244.

  • Lunin, V.Y., Lunina, N.L. & Urzhumtsev, A.G. (1999). "Seminvariant density decomposition and connectivity analysis and their application to very low resolution macromolecular phasing", Acta Cryst. A55, 916-925.

  • Petrova, T.E., Lunin V.Y. & Podjarny, A.D. (1999). "A likelihood-based search for the macromolecular position in the crystalline unit cell", Acta Cryst. A55, 739-745.

  • Petrova, T.E., Lunin, V.Yu., Lunina, N.L. & Skovoroda, T.P. (1999). "Maximum Likelihood Approach to Choosing a Prior Distribution of Atomic Coordinates in Macromolecular Structures". Biophysics, 44,1, 18-22.

  • Lunin, V.Yu., Lunina, N.L., Petrova, T.E., Urzhumtsev A.G. & Podjarny A.D. (1998). "On the Ab initio solution of the Phase Problem for Macromolecules at Very Low Resolution. II. Generalized Likelihood Based Approach to Cluster Discrimination". Acta Cryst. D54, 726-734.

  • Lunin, V.Yu. & Lunina, N.L. (1996). "The Map Correlation Coefficient for Optimally Superposed Maps". Acta Cryst. A52, 365-368.

  • Lunin, V.Yu., Lunina, N.L., Petrova, T.E., Vernoslova, E.A., Urzhumtsev, A.G. & Podjarny, A.D. (1995). "On the ab-initio Solution of the Phase Problem for Macromolecules at Very Low Resolution: the Few Atoms Model Method". Acta Cryst., D51, 896-903.

The full texts of papers

Papers in digest

  • N.L. Lunina , V.Y. Lunin & A.D. Podjarny (2002). "Retrieval of lost reflections in high resolution Fourier syntheses by a 'soft' solvent flattening". CCP4 Newsletter on Protein Crystallography, 41_10.

  • Lunin, V.Yu., Lunina, N.L., Petrova, T.E., Vernoslova, E.A., Urzhumtsev, A.G. & Podjarny, A.D. (1994). "On the ab-initio solution of the phase problem for macromolecules at very low resolution. The Few Atoms Model method". Joint CCP4 and ESF-EACBM Newsletter on Protein Crystallography, 30, 37-44.

The full texts of papers

Theses

  • Lunina, N.L. (1998). "Computational approaches to the solution of the low resolution phase problem in macromolecular crystallography". Resume of Ph.D. Theses, ONTI PNC RAN, Pushchino, Russia. (In Russian)

  • Lunina, N.L. (1998). "Computational approaches to the solution of the low resolution phase problem in macromolecular crystallography". Ph.D. Theses, ITEB RAS, Pushchino, Russia. (In Russian)

The full texts of papers

Abstracts

  • Fokine, A., Lunina, N., Lunin, V.Y. & Urzhumtsev, A. (2002). "Bulk solvent and its role in macromolecular phasing". Acta Cryst., A58, S, C267 [Collected Abstracts, XIXth IUCr Congress & General Assembly, 6-15 August 2002, Geneva, Switzerland, 267].

  • Lunina, N.L. (2002). "The use of connectivity properties of electron density distributions in determination of structures of biological macromolecules". V International Congress on Mathematical Modelling, September30-October 6, 2002, Dubna, Moscow Region, Book of Abstracts, Volume II, Joint Institute of Nuclear Research, Laboratory of Information Technologies, Council on mathematical modelling of RAS, Dubna 2002, 210.

  • Urzhumtsev, A., Lunin, V.Yu., Lunina, N.L., Ritter, S., Frey, I., Keul, J., Diederichs, K., Podjarny, A. & Baumstark, M. (2002). "LDL particle : Direct structure determination ". Collected Abstracts, ACA Meeting, 25-30 May 2002, San Antonio, USA, 33.

  • Urzhumtsev, A., Lunina, N., Chabriere, E. & Lunin, V.Y. (2002). "Direct phasing in crystallography : connectivity of electron density maps". Z. Krist., Suppl., 19, 16. [Collected Abstracts, DGK Meeting, 4-7 March 2002, Kiel, Germany].

  • Urzhumtsev, A., Lunina, N.L. & Lunin, V.Y. (2002). "The connectivity-based choice in macromolecular low resolution ab-initio phasing". Acta Cryst., A58, S, C43 [Collected Abstracts, XIXth IUCr Congress & General Assembly, 6-15 August 2002, Geneve, Switzerland, 43].

  • Chabriere E., Lunina, N., Urzhumtsev, A.G. & Lunin, V.Y. (2001). Phasage ab initio par criteres de connectivite: de la basse resolution aux structures secondaires. AFC2001 Colloque de l'Association Francaise de Cristallographie, Orsay,3-6 juillet 2001, 99.

  • Chabriere, E., Lunina, N., Lunin, V.Y. & Urzhumtsev, A. (2001). "From low resolution to secondary structure elements". ECM-20 Abstracts, XXth European Cryst.Meeting, 25-31 August 2001, Krakow, Poland, 70.

  • Lunina, N.L., Lunin, V.Y. & Urzhumtsev, A.G. (2000). "Use of map connectivity properties in macromolecular ab-initio phasing". Acta Cryst. A56, S, S62.

  • Ritter, S., Lunina, N.L., Lunin, V.Y., Urzhumtsev, A.G., Podjarny, A.D., Frey, I., Diederichs, K. & Baumstark, M.W. (2000). "Crystallization and structure determination of human low density lipoprotein (LDL) at low resolution, using ab initio phases". Acta Cryst. A56, S, S299.

  • Urzhumtsev, A., Lunin, V. Y. & Lunina, N. (2000). "Density constraints and direct phasing". Acta Cryst. A56, S, S108.

  • Lunina, N.L., Lunin V.Y. & Urzhumtsev A.G. (2000). "Use of map connectivity properties in macromolecular ab-initio phasing". 19th European Crystallographic Meeting, Abstract book, 25th-31st August 2000 Nancy, France, 62.

  • Urzhumtsev, A., Lunin, V.Y. & Lunina, N. (2000). "Density constraints and direct phasing". 19th European Crystallographic Meeting, Abstract book, 25th-31st August 2000 Nancy, France, 108.

  • Ritter, S., Lunina, N.L., Lunin, V.Y., Urzhumtsev, A.G., Podjarny, A.D., Frey, I., Diederichs, K. & Baumstark, M.W. (2000). "Crystallizacion and structure determination of human low density lipoprotein (LDL) at low resolution, using ab initio phases". 19th European Crystallographic Meeting, Abstract book, 25th-31st August 2000 Nancy, France, 299.

  • Lunin, V.Y., Lunina, N.L., Podjarny, A.D., Ritter, S., Frey, I., Keul, J., Diederichs, K., Baumstark, M.W. & Urzhumtsev, A.G. (2000). "Structure of human low density lipoprotein (LDL) at low resolution: ab initio phasing methods for structure determination". ECM19 Satellite Meeting "Frontiers in macromolecular crystallography", Bishenberg, August, 31-September, 3, France, 31.

  • Lunina, N., Lunin, V.Y., Podjarny, A., Ritter, S., Frey, I., Keul, J., Diederichs, K., Baumstark, M. & Urzhumtsev, A. (2000). "Structure of human low density lipoprotein (LDL) at low resolution: structure determination and analysis". ECM19 Satellite Meeting "Frontiers in macromolecular crystallography", Bishenberg, August, 31-September, 3, France, 32.

  • Lunina, N.L., Lunin, V.Y. & Urzhumtsev, A.G. (1999). "The connectivity-based choice in macromolecular low resolution ab-initio phasing". XVIII Congress and General Assembly of ICU, Glasgow, Scotland, UK, August 4-13, 1999. Collected Abstracts, 123.

  • Urzhumtsev, A.G., Lunina, N. & Lunin, V. (1999). "Proprietes Topologiques et Phasage Direct". GTBio-99, 12-15 Oct. 1999,Hourtin (Bordeaux, France), CO31.

  • Lunin, V.Yu., Lunina, N.L., Petrova, T.E., Urzhumtsev, A.G. & Podjarny A.D. (1998). "Very low resolution ab-initio phasing. Problems and advances". Eighteenth European Crystallographic Meeting, Praha, Czech Republic, August 15-20, 1998. Abstracts (A), 131-132.

  • Lunina, N.L. (1998). "Software for very low resolution ab-initio phasing". Eighteenth European Crystallographic Meeting, Praha, Czech Republic, August 15-20, 1998. Abstracts (B), 480-481.

  • Podjarny, A.D., Lunina, N., Urzhumtsev, A.G., Vernoslova, E.A., Petrova, T. & Lunin, V. (1998). "Ab-initio phasing at 30 A of the t50S ribosomal particle with the Few Atoms Model method". ACA Annual Meeting, Arlington, Virginia, July 18-23, 1998, 11.03.08, 74.

  • Podjarny, A.D., Urzhumtsev, A.G., Vernoslova, E.A., Petrova, T., Lunina, N. & Lunin V. (1998). "Recent advances on the application of the few atom model method to the T50S ribosomal particle". Association Francaise de Cristallographie, AFC98, Orleans, 24-27 fevrier 1998, BCG-A02.

  • Urzhumtsev, A.G., Lunin, V.Y. & Lunina, N.L. (1998). "Seminvariant density decomposition and connectivity analysis in the low resolution macromolecular phasing". Eighteenth European Crystallographic Meeting, Praha, Czech Republic, August 15-20, 1998. Abstracts (A), 482-483.

  • Lunin, V.Yu., Lunina, N.L., Petrova, T.E., Urzhumtsev, A.G. & Podjarny, A.D. (1997). "A generalized likelihood and the phase cluster choice problem". In Direct methods for solving macromolecular structures, Lecture Notes, Erice, Italy, May 22 - June 02 1997, 485.

  • Lunina, N.L., Lunin, V.Yu. & Urzhumtsev, A.G. (1997). "Density growing" - a new approach to local improvement of Fourier syntheses". National conference on the use of X-ray, synchrotron radiations, neutrons and electrons in material studies, Dubna, 25-29 May 1997, 222. (In Russian)

  • Lunina, N.L. & Urzhumtsev, A. (1997). "Density growing: a new approach to the local improvement of electron density maps". XVIIth European Cryst.Meeting, 24-28 August 1997, Lisbon, Portugal, 92.

  • Lunin, V.Yu., Urzhumtsev, A.G., Vernoslova, E.A., Lunina, N.L., Petrova, T.E. & Podjarny, A.D. (1995). "La methode FAM pour le phasage ab-initio: Theorie". AFC95, 24-27 Jan. 1995, Grenoble, P07a.

  • Lunin, V.Yu., Lunina, N.L., Petrova, T.E., Vernoslova, E.A., Urzhumtsev, A.G. & Podjarny, A.D. (1995). "On the ab-initio solution of the phase problem for macromolecules at very low resolution: the Few Atoms Models method". 4th European Workshop on Crystallography of Biological Macromolecules, Como (Italy), May 21-25, O19.

  • Urzhumtsev, A.G., Lunin, V.Yu., Vernoslova, E.A., Lunina, N.L., Petrova, T.E., Navaza, J. & Podjarny, A.D. (1994). "Very low resolution phasing with simple models". 15th Eur. Cryst. Meeting, Dresden, Germany, 28.8-2.9/1994, Coll.Abstr., R.Oldenbourg Verlag, Munchen, 217.

  • Lunin, V.Yu., Lunina, N.L., Petrova, T.E., Vernoslova, E.A., Urzhumtsev, A.G. & Podjarny, A.D. (1994). "A Monte Carlo Approach to low resolution phasing in protein crystallography". ACA Annual Meeting, June 25 - July 1, 1994, INFORUM, Atlanta, Georgia, Atlanta Convention Center, 178.

The full texts of papers

Papers in computer science

  • Lunina, N.L. "Educational computer programs in genetics". (1993). Biology in the School, 5, 49-52. (In Russian)

  • Lunina N.L.. (1992). "The package of educational programs BIOLOGY". Computer Sciences and Education, 5, 104-105. (In Russian)

  • Lunina N.L.. (1992). "The package of educational programs "BIOLOGY". Software, Pushchino Research Centre, Pushchino, Russia.

  • Lunina, N.L. (1990). "The package of educational programs in biology. Genetics". Software, NCBI AN SSSR, Pushchino, Russia. (In Russian)

  • Lunina, N.L. (1990). "Computers in education: the goal and the tool". The seventh seminar "The problems of computer science and its application in management, education and scientific researches". Geletchica'88. Proceedings, Sofia, 167-168 (In Russian)

  • Lunina, N.L. (1989). "A course of programming. Basic constructions". Lecture notes, NCBI RAN SSSR, Pushchino, Russia. (In Russian)

  • Lunina, N.L. (1989). "A course of programming. BASIC". Lecture notes, NCBI RAN SSSR, Pushchino, Russia. (In Russian)

  • Lunina, N.L. (1989). "A course of programming. PASCAL". Lecture notes, NCBI AN SSSR, Pushchino, Russia. (In Russian)

  • Lunina, N.L. (1988). "Computer support of a course of Biology". Biology in the School, 5, 57-59. (In Russian)

  • Lunina, N.L. (1988). "Computer support of the teaching English in the secondary school". Foreign Languages in the Secondary School, 3, 36-38. (In Russian)

  • Lunina, N.L. (1988). "Computer support of the teaching to Biology. Protein biosynthesis". Software., NCBI RAN SSSR, Pushchino, Russia. (In Russian)

  • Lunina, N.L. (1988). "Algorithmic language Basic for YAMAHA PC". Lecture notes, NCBI AN SSSR, Pushchino, Russia. (In Russian)

  • Lunina, N.L. (1988). "The program package "LEARN ENGLISH". Computer Sciences and Education, 5, 72-74. (In Russian)

  • Lunina, N.L. (1987). "What can the schoolchildren do?" Computer Sciences and Education, 6, 72-73. (In Russian)

  • Lunina, N.L. (1987). "Algorithmic language Basic for YAMAHA PC". Lecture notes, NCBI AN SSSR, Pushchino, Russia. (In Russian)

  • Lunina, N.L. (1987). "Computer support of the teaching English in the secondary school". Software., NCBI AN SSSR, Pushchino, Russia. (In Russian)

  • Lunina, N.L. (1986). "The teaching to programming in the secondary school". Lecture notes, NCBI AN SSSR, Pushchino. (In Russian)

  • Lunina, N.L. (1984). "The computer-based system HEID for the treatment of nucleotide sequences". Software., NCBI AN SSSR, Pushchino, Russia. (In Russian)

The full texts of papers