Structure

Laboratory of Macromolecular Crystallography


Publications by V.Y.Lunin

At 2003, January 01

The full texts of papers, preprints and theses may be found here.

Crystallographic papers

Papers in journals

  • Lunin, V.Y., Afonine P.V. & Urzhumtsev, A.G. (2002). "Likelihood-based refinement. I. Irremovable model errors". Acta Cryst. A58, 270-282.

  • Lunin, V.Y., Urzhumtsev, A. & Bockmayr, A. (2002). "Direct phasing by binary integer programming". Acta Cryst. A58, 283-291.

  • Lunin, V.Y., Lunina, N.L., Ritter, S., Frey, I., Berg, A., Diderichs, K., Podjarny, A.D., Urzhumtsev, A. & Baumstark M.W. (2001). "Low-resolution data analysis for low-density lipoprotein particle". Acta Cryst. D57, 108-121.

  • Urzhumtsev, A.G. & Lunin, V.Y. (2001). "Fast differentiation algorithm and efficient calculation of the exact matrix of second derivatives". Acta Cryst. A57, 451-460.

  • Lunin, V.Y. (2000). "Fixed-scale wavelet-type approximation of periodic density distributions". Acta Cryst. A56, 73-84.

  • Lunin, V.Y., Lunina, N.L. & Urzhumtsev, A.G. (2000). "Connectivity properties of high-density regions and ab initio phasing at low resolution". Acta Cryst. A56, 375-382.

  • Lunin, V.Y., Lunina, N.L., Petrova, T.E., Skovoroda, T.P., Urzhumtsev, A.G. & Podjarny, A.D. (2000). "Low-resolution ab initio phasing: problems and advances". Acta Cryst. D56, 1223-1232.

  • Urzhumtsev, A.G., Lunina, N.L., Skovoroda, T.P., Podjarny, A.D. & Lunin, V.Y. (2000). "Density constraints and low-resolution phasing". Acta Cryst. D56, 1233-1244.

  • Petrova, T.E., Lunin, V.Y. & Podjarny, A.D. (2000). "Ab initio low-resolution phasing in crystallography of macromolecules by maximization of likelihood". Acta Cryst. D56, 1245-1252.

  • Shlyapnikov, S.V., Lunin, V.V., Perbandt, M., Polyakov, K.M., Lunin, V.Yu., Levdikov, V.M., Betzel, Ch. & Mikhailov, A.M.. (2000). "Atomic structure of the Serratia marcescens endonuclease at 1.1 A resolution and the enzyme reaction mechanism." Acta Cryst. D56, 567-572.

  • Skovoroda, T.P. & Lunin, V.Yu. (2000). "Reliability of Maximum Likelihood-Based Figures of Merit". Crystallography Reports, 45, No. 2, 195-198.

  • Lunin, V.Y., Lunina, N.L. & Urzhumtsev, A.G. (1999). "Seminvariant density decomposition and connectivity analysis and their application to very low resolution macromolecular phasing". Acta Cryst. A55, 916-925.

  • Petrova, T.E., Lunin, V.Y. & Podjarny, A.D. (1999). "A likelihood-based search for the macromolecular position in the crystalline unit cell". Acta Cryst. A55, 739-745.

  • Lunin, V.Yu., Blagova, E.V., Levdikov, V.M., Lunin, V.V., Shlyapnikov, S.V., Perbandt, M., Raishankar, K.S., Betzel, H. & Mikhailov, A.M. (1999). "Extracellular Endonuclease of Serratia marcescens. I. Three-Dimensional Structure of Crystalline Protein at 1.7A Resolution", Molecular Biology, 33, 2, 180-187.

  • Shlyapnikov, S.V., Blagova, E.V., Levdikov, V.M., Lunin, V.Yu., Lunin, V.V., Mikhailov, A.M., Betzel, Ch., Rajashankar, K.S. & Perbandt, M. (1999). "Extracellular Endonuclease of Serratia marcescens. II. Active Site Amino Acid Residues and a Hypothetical Mechanism of Enzyme Functioning". Molecular Biology, 33, 3, 398-404.

  • Petrova, T.E., Lunin, V.Yu., Lunina, N.L. & Skovoroda, T.P. (1999). "Maximum Likelihood Approach to Choosing a Prior Distribution of Atomic Coordinates in Macromolecular Structures". Biophysics, 44, 1, 18-22.

  • Lunin, V.Yu., Lunina, N.L., Petrova, T.E., Urzhumtsev A.G. & Podjarny A.D. (1998). "On the Ab initio solution of the Phase Problem for Macromolecules at Very Low Resolution. II. Generalized Likelihood Based Approach to Cluster Discrimination". Acta Cryst. D54, 726-734.

  • Lunin, V.Yu., Levdikov, V.M., Shliapnikov, S.V., Blagova, E.V., Lunin V.V., Wilson, K.S. & Mikhailov A.M. (1997). "Three-dimensional structure of Serratia marcescens nuclease at 1.7 ? resolution and mechanism of its action". FEBS Letters, 412, 217-222.

  • Lunin, V.Yu. & Lunina, N.L. (1996). "The Map Correlation Coefficient for Optimally Superposed Maps". Acta Cryst. A52, 365-368.

  • Urzhumtsev, A.G., Skovoroda, T.P. & Lunin, V.Yu. (1996). "A procedure compatible with X-PLOR for the calculation of electron-density maps weighted using an R-free-likelihood-based approach". J.Appl.Cryst., 29, 741-744.

  • Lunin, V.Yu. & Skovoroda, T.P. (1995). "R-free Likelihood-Based Estimates of Errors for Phases Calculated from Atomic Models". Acta Cryst. A51, 880-887.

  • Lunin, V.Yu., Lunina, N.L., Petrova, T.E., Vernoslova, E.A., Urzhumtsev, A.G. & Podjarny, A.D. (1995). "On the ab-initio Solution of the Phase Problem for Macromolecules at Very Low Resolution: the Few Atoms Model Method". Acta Cryst., D51, 896-903.

  • Lunin, V.Yu. (1993). "Electron-Density Histograms and the Phase Problem". Acta Cryst. D49, 90-99.

  • Vernoslova, E.A. & Lunin, V.Yu. (1993). "The FROG PC series: programs for electron-density and model investigation for proteins". J.Appl.Cryst., 26, 291-294.

  • Lunin, V.Yu. & Woolfson, M.M. (1993). "Mean Phase Error and the Map Correlation Coefficient". Acta Cryst. D49, 530-533.

  • Lunin, V.Yu. & Skovoroda, T.P. (1991). "Frequency-Restrained Structure Factor Refinement. I. Histogram Simulation". Acta Cryst. A47, 45-52.

  • Lunin, V.Yu. & Vernoslova, E.A. (1991). "Frequency-Restrained Structure Factor Refinement. II. Comparison of Methods". Acta Cryst. A47, 238-243.

  • Chirgadze, Yu.N., Nevskaya, N.A., Vernoslova, E.A., Nikonov, S.V., Sergeev, Yu.V., Brazhnikov, E.V., Fomenkova, N.P., Lunin, V.Yu. & Urzhumtsev, A.G. (1991). "Crystal structure of calf eye lens gamma-crystalline IIIb at 2.5A resolution: its relation to function". Experimental Eye Research, 53, 295-304.

  • Chirgadze, Yu.N., Brazhnikov, E.V., Nikonov, S.V., Fomenkova, N.P., Garber, M.B., Lunin, V.Yu., Urzhumtsev, A.G. , Chirgadze, N.Yu. & Nekrasov, Yu.V. (1991). "Crystal structure of ribosomal factor G from bacteria Thermus thermophilus at low resolution". Dokl.Acad.Nauk SSSR, 320, 488-491 (In Russian)

  • Lunin, V.Yu., Urzhumtsev, A.G. & Skovoroda, T.A. (1990). "Direct low-resolution phasing from electron-density histograms in protein crystallography". Acta Cryst., A46, 540-544.

  • Lobsanov, Yu.D., Pletnev, V.Z., Vtyurin, N.N., Lubnin, M.Yu., Mokulskii, M.A., Urzhumtsev, A.G., Lunin, V.Yu. & Luzyanina, T.B. (1990). "X-ray study of the pea lectin-carbohydrate complex at 2.4A resolution. I. Atomic model". Bioorganic Chemistry (USSR), 16, 12, 1589-1598. (In Russian)

  • Urzhumtsev, A.G., Lunin, V.Yu. & Luzyanina, T.B. (1989). "Bounding a Molecule in a Noisy Synthesis". Acta Cryst., A45, 34-39.

  • Urzhumtsev, A.G., Lunin, V.Yu. & Vernoslova, E.A. (1989). "FROG - high-speed restraint-constraint refinement program for macromolecular structure". J.Appl.Cryst., 22, 500-506.

  • Lunin, V.Yu. (1989). "The Calculation of the Second Moments for the Values of Fourier Syntheses with Random Structure Factors". Acta Cryst. A45, 501-505.

  • Lunin, V.Yu. (1988). "Use of Information on Electron Density Distribution in Macromolecules". Acta Cryst. A44, 144-150.

  • Lunin, V.Yu. (1988). "The retrieval of absent structure factors in X-ray structure determination". Dokl.Akad.Nauk SSSR, 299, 2, 363-366. (In Russian)

  • Chirgadze, Yu.N., Nevskaya, N.A., Fomenkova, N.P., Nikonov, S.V., Sergeev, Yu.V., Brazhnikov, E.V., Garber, M.B., Lunin, V.Yu., Urzhumtsev, A.G. & Vernoslova, E.A. (1986). "Spatial structure of gamma-crystallin IIIb from calf lens at 2.5A resolution". Dokl.Akad.Nauk SSSR, 290, 2, 492-495. (In Russian)

  • Lunin, V.Yu., Urzhumtsev, A.G., Vernoslova, E.A., Chirgadze, Yu.N., Nevskaya, N.A. & Fomenkova, N.P. (1985). "Phase Improvement in Protein Crystallography Using a Mixed Electron Density Model". Acta Cryst., A41, 166-171.

  • Lunin, V.Yu. & Urzhumtsev, A.G. (1985). "Program construction for macromolecule atomic model refinement based on the fast Fourier transform and fast differentiation algorithms". Acta Cryst. A41, 327-333.

  • Lunin, V.Yu. (1985). "Use of the Fast Differentiation Algorithm for Phase Refinement in Protein Crystallography". Acta Cryst. A41, 551-556.

  • Vazina, A.A., Korystova, A.F., Shelestov, V.M., Vernoslov, S.E., Lunin V.Yu., Kozlov M.A. & Kraizman, V.L. (1985). "Investigation of the structure of calmoduline metal-binding centers by EXAFS-spectroscopy". Mol.Biol.(USSR), 19, 6, 1643-1647. (In Russian)

  • Lunin, V.Yu. & Urzhumtsev, A.G. (1984). "Improvement of Protein Phases by Coarse Model Modification". Acta Cryst., A40, 269-277.

  • Vazina, A.A., Koristova, A.F., Shelestov, V.M., Vernoslov, S.E., Lunin V.Yu , Kozlov M.A. & Kraisman, V.L.. (1984). "Investigation of Ca2+-binding centers of parvalbumine by distant fine structure of X-ray absorption spectra". Mol.Biol.(USSR), 18, 3, 681-684. (In Russian)

  • Lunin, V.Yu. & Urzhumtsev, A.G. (1983). "Improvement of electron density maps for proteins using atomic model structure". Kristallografiya (USSR), 28, 310-315. (In Russian)

  • Chirgadze, Yu.N., Sergeev, Yu.V., Fomenkova, N.P., Nikonov, S.V. & Lunin, V.Yu. (1980). "Structure determination of gamma-crystallin II from calf lens at 5A resolution". Dokl.Akad.Nauk SSSR, 250, 3, 762-765. (In Russian)

  • Chirgadze, Yu.N., Oreshin, V.D., Sergeev, Yu.V., Nikonov, S.V. & Lunin, V.Yu. (1980). "Structure of gamma-crystalline IIIb from calf lens at 5A resolution". FEBS Letters, 118, 2, 296-298.

The full texts of papers

Papers in digest

  • Lunin, V.Y., Urzhumtsev, A. & Bockmayr, A. (2002). "Direct phasing by Binary integer programming and its use for envelope determination". CCP4 Newsletter on Protein Crystallography, 40_12.

  • Afonine, P., Lunin, V.Y. & Urzhumtsev, A. (2002). "Search of the optimal strategy for refinement of atomic models". CCP4 Newsletter on Protein Crystallography, 40_14.

  • Lunina, N.L., Lunin, V.Y. & Podjarny, A.D. (2002). "Retrieval of lost reflections in high resolution Fourier syntheses by a 'soft' solvent flattening". CCP4 Newsletter on Protein Crystallography, 41_10.

  • Afonine, P., Lunin, V.Y. & Urzhumtsev, A.G. (2001). "Maximum-likelihood refinement of atomic models using least-squares criterion". CCP4 Newsletter on protein crystallography, 39, 52-56.

  • Urzhumtsev, A.G. & Lunin, V.Y. (2001). "Efficient calculation of the exact matrix of the second derivatives". CCP4 Newsletter on protein crystallography, 39, 60-67.

  • Lunin, V.Y., Podjarny, A.D. & Urzhumtsev, A. (2001). "Low-resolution phasing in macromolecular crystallography". In : Advances in Structure Analysis, CSCA, Prague, Czech Republic, R.Kuzel & J.Hasek, eds., 4-36.

  • Urzhumtsev, A., Podjarny, A. & Lunin, V.Y. (2001). "Ab initio phasing starting from low resolution". Invited article. Euroconference on Phasing, 23-27 June 2001, Martina Franca, Italy, 4.35-4.40.

  • Lunin, V.Y. & Urzhumtsev, A.G. (1999). "Maximal Likelihood Refinement. It works, but why?". CCP4 Newsletter on Protein Crystallography, 37, 14-28.

  • Urzhumtsev, A.G., Podjarny, A.D. & Lunin, V.Y. (1998). "On density modification at very low resolution", CCP4 Newsletter on Protein Crystallography, 35, 25-33.

  • Lunin, V.Y. (1997). "The likelihood based choice of priors in statistical approaches to the phase problem". In Direct Methods for Solving Macromolecular Structures, ed. S.Fortier, NATO ASI Series C, Vol.507, 451-454.

  • Podjarny, A.D., Urzhumtsev, A.G. & Lunin, V.Y. (1997). "Model based low resolution phasing". In Direct Methods for Solving Macromolecular Structures, ed. S.Fortier, NATO ASI Series C, Vol.507, 421-431.

  • Urzhumtsev, A.G., Lunin, V.Yu. & Podjarny, A.D. (1997). "Low resolution crystallographic images". Iin Recent Advances in Phasing, ed. By K.S.W.Wilson, G.Davies, A.W.Ashton & S.Bailey, Proceedings of the CCP4 Study Weekend, University of York, 3-4 January, 1997, 207-214.

  • Lunin, V.Yu., Lunina, N.L., Petrova, T.E., Vernoslova, E.A., Urzhumtsev, A.G. & Podjarny, A.D. (1994). "On the ab-initio solution of the phase problem for macromolecules at very low resolution. The Few Atoms Model method". Joint CCP4 and ESF-EACBM Newsletter on Protein Crystallography, 30, 37-44.

  • Vernoslova, E. & Lunin, V. (1992). "FAN Scalar Field Analysis". Joint CCP4 and ESF-EACBM Newsletter on Protein Crystallography, 27, 35.

  • Vernoslova, E & Lunin, V. (1992). "CAN Comparative Analysis of three-dimensional Functions". Joint CCP4 and ESF-EACBM Newsletter on Protein Crystallography, 27, 37.

  • Urzhumtsev, A.G., Lunin, V.Yu. & Vernoslova, E.A. (1990). "New refinement program FROG gives new possibilities to study macromolecular models". Proc.of the First Intern. Meeting on Structure and Chemistry of Ribonucleases, Moscow, USSR, December 1989, 410-415.

  • Urzhumtsev, A.G., Lunin, V.Yu. & Vernoslova, E.A. (1989). "The program complex FROG for local refinement of atomic structures of macromolecules". In Computing methods of protein engineering, Software, Institute of Mathematics AS BSSR & Institute of biochemistry, 86, 86-97, Minsk. (In Russian)

  • Vazina, A.A., Korystova, A.F., Shelestov, V.M., Vernoslov, S.E., Kozlov M.A., Kraizman, V.L. & Lunin V.Yu. (1984). "The study of metal-binding sites in troponine, calmoduline and parvalbumine with the use of EXAFS spectra". IV USSR Meeting on the use of synchrotron sources, Novosibirsk 1984, Proceedings, 250-254. (In Russian)

The full texts of papers

Preprints & Software

  • Lunin, V.Yu. (1994). "Mathematical tools for X-ray structure analysis of macromolecules" Lecture notes for students of department of applied mathematics of Puschino University. (In Russian)

  • Lunin, V.Yu. (1991). "Use of the electron-density-syntheses histograms or solving of the phase problem in protein crystallography". Preprint, Pushchino Research Centre, Russia. (In Russian)

  • Urzhumtsev, A.G., Lunin, V.Yu. & Vernoslova, E.A. (1988). "Program package FROG". Software, FORTRAN, 10, NCBI AN SSSR, Pushchino, Russia. (In Russian)

  • Lunin, V.Yu. (1986). "The use of information on electron density distribution in proteins. The retrieval of absent structure factors". Preprint, NCBI AN SSSR, Pushchino, Russia. (In Russian)

  • Lunin, V.Yu., Urzhumtsev, A.G., Vernoslova, E.A., Chirgarze, Yu.N., Fomenkova, N.P. & Nevskaya, N.A. (1984). "Using of atomic mixed model for phase improvement in protein crystallography". Preprint, NCBI AN SSSR, Pushchino, Russia. (In Russian)

  • Lunin, V.Yu. (1984.) "The use of the fast differentiation algorithm for phase refinement". Preprint, Pushchino, NCBI AN SSSR, Russia. (In Russian)

  • Lunin, V.Yu. & Urzhumtsev, A.G. (1983). "Program construction for macromolecular atomic model refinement based on Fast Fourier and Fast Differentiation algorithms". Preprint, NCBI AN SSSR, Pushchino. (In Russian)

  • Lunin, V.Yu. (1983). "X-RAY analysis. Problems in structure determination". Preprint, NCBI AN SSSR, Pushchino, Russia. (In Russian)

  • Gadzhiev, A.M., Matushin, A.M., Vazina, A.A., Yasenev, M.Y., Shuvalov, B.N. & Lunin, V.Yu. (1983). "The software for high-speed X-ray difractometry at high time resolution". Preprint, NCBI AN SSSR, Pushchino, Russia. (In Russian)

  • Lunin, V.Yu. (1982). "Optimization of calculation of structure factors in protein crystallography". Preprint, NCBI AN SSSR, Pushchino, Russia. (In Russian)

  • Vernoslov, S.E. & Lunin, V.Yu. (1982). "Some algorithmic aspects of the treatment of EXAFS spectra". Preprint, NCBI AN SSSR, Pushchino, Russia. (In Russian)

  • Lunin, V.Yu. (1982). "The use of the maximum likelihood approach to estimate phase errors in protein crystallography". Preprint, NCBI AN SSSR, Pushchino, Russia. (In Russian)

  • Urzhumtsev, A.G. & Lunin, V.Yu. (1982). "Electron-density-maps improvement by use of refinement of atomic model structure. II. Phase improvement for ?-crystalline". Preprint, NCBI AN SSSR, Pushchino. (In Russian)

  • Lunin, V.Yu. & Urzhumtsev, A.G. (1981). "Electron-density-maps improvement by use of refinement of atomic model structure. I. The method's description". Preprint, NCBI AN SSSR, Pushchino. (In Russian)

  • Lunin, V.Yu. (1979). "The program package FFT". Software, FORTRAN, 3, NCBI AN SSSR, Pushchino, Russia. (In Russian)

  • Lunin, V.Yu. (1979). "The phasing program of L.ten-Eyck". Software, FORTRAN, 4, NCBI AN SSSR, Pushchino, Russia. (In Russian)

The full texts of papers

Theses

  • Lunin, V.Yu. (1992). "The use of statistical properties of the electron density Fourier syntheses for the solution of the phase problem in protein crystallography". Resume of Dr.Sci.Theses, ONTI PNC RAN, Pushchino, Russia. (In Russian)

  • Lunin, V.Yu. (1992). "The use of statistical properties of the electron density Fourier syntheses for the solution of the phase problem in protein crystallography". Dr.Sci.Theses, Institute of Crystallography RAS, Moscow, Russia. (In Russian)

  • Lunin, V.Yu. (1976). "On asymptotic behaviour of the solution of the first boundary value problem for quasi-linear partial differential equations containing a small parameter". Resume of Ph.D. Theses, MSU, Moscow, Russia. (In Russian)

  • Lunin, V.Yu. (1976). "On asymptotic behaviour of the solution of the first boundary value problem for quasi-linear partial differential equations containing a small parameter". Ph.D. Theses, MSU, Moscow, Russia. (In Russian)

The full texts of papers

Abstracts

  • Afonine, P., Lunin, V.Y. & Urzhumtsev, A. (2002). "Quadratic approximation of the maximum-likelihood criterion ". Acta Cryst., A58, S, C263 [Collected Abstracts, XIXth IUCr Congress & General Assembly, 6-15 August 2002, Geneve, Switzerland, 263].

  • Fokine, A., Lunina, N., Lunin, V.Y. & Urzhumtsev, A. (2002). "Bulk solvent and its role in macromolecular phasing". Acta Cryst., A58, S, C267 [Collected Abstracts, XIXth IUCr Congress & General Assembly, 6-15 August 2002, Geneve, Switzerland, 267].

  • Lunin, V.Y. (2002). "Determination of three-dimensional structure of biological macromolecules: mathematics and computers". V International Congress on Mathematical Modelling, September30-October 6, 2002, Dubna, Moscow Region, Book of Abstracts, Volume II, Joint Institute of Nuclear Research, Laboratory of Information Technologies, Council on mathematical modelling of RAS, Dubna 2002, 209.

  • Urzhumtsev, A., Lunin, V.Yu., Lunina, N.L., Ritter, S., Frey, I., Keul, J., Diederichs, K., Podjarny, A. & Baumstark, M. (2002). "LDL particle : Direct structure determination ". Collected Abstracts, ACA Meeting, 25-30 May 2002, San Antonio, USA, 33.

  • Urzhumtsev, A., Lunina, N., Chabriere, E. & Lunin, V.Y. (2002). "Direct phasing in crystallography : connectivity of electron density maps". Z. Krist., Suppl., 19, 16. [Collected Abstracts, DGK Meeting, 4-7 March 2002, Kiel, Germany].

  • Urzhumtsev, A., Lunina, N.L. & Lunin, V.Y. (2002). "The connectivity-based choice in macromolecular low resolution ab-initio phasing". Acta Cryst., A58, S, C43 [Collected Abstracts, XIXth IUCr Congress & General Assembly, 6-15 August 2002, Geneve, Switzerland, 43].

  • Lunin, V.Y., Urzhumtsev, A.G. & Podjarny, A.D. (2001). "Phasage ab initio a basse resolution". AFC2001 Colloque de l'Association Francaise de Cristallographie, Orsay,3-6 juillet 2001, 95.

  • Afonine, P., Lunin, V.Y. & Urzhumtsev, A.G. (2001). "Simulation du critere de vraisemblance maximale par le critere de moindre carre". AFC2001 Colloque de l'Association Francaise de Cristallographie, Orsay,3-6 juillet 2001, 97.

  • Chabriere E., Lunina, N., Urzhumtsev, A.G. & Lunin, V.Y. (2001). Phasage ab initio par criteres de connectivite: de la basse resolution aux structures secondaires. AFC2001 Colloque de l'Association Francaise de Cristallographie, Orsay,3-6 juillet 2001, 99.

  • Urzhumtsev, A., Podjarny, A. & Lunin, V.Y. (2001). Ab initio phasing starting from low resolution. Euroconference on Phasing Biological Macromolecules (Phabio). Martina Franca - Italy, June 23-27, 2001, 4.35-4.40.

  • Afonine, P., Lunin, V.Y. & Urzhumtsev, A.G. (2001). Maximum-likelihood refinement of atomic models using least-squares criterion. Euroconference on Phasing Biological Macromolecules (Phabio). Martina Franca - Italy, June 23-27, 2001, 4.47-4.51.

  • Afonine, P., Lunin, V.Y. & Urzhumtsev, A. (2001). "Maximum-likelihood refinement of atomic models using least squares criterion". ECM-20 Abstracts, XXth European Cryst.Meeting, 25-31 August 2001, Krakow, Poland, 148.

  • Chabriere, E., Lunina, N., Lunin, V.Y. & Urzhumtsev, A. (2001). "From low resolution to secondary structure elements". ECM-20 Abstracts, XXth European Cryst.Meeting, 25-31 August 2001, Krakow, Poland, 70.

  • Lunin, V.Y., Lunina, N.L., Podjarny, A.D., Ritter, S., Frey, I., Keul, J., Diederichs, K., Baumstark, M.W. & Urzhumtsev, A.G. (2000). "Structure of human low density lipoprotein (LDL) at low resolution: ab initio phasing methods for structure determination". ECM19 Satellite Meeting "Frontiers in macromolecular crystallography", Bishenberg, August, 31-September, 3, France, 31.

  • Lunin, V.Y. & Urzhumtsev, A. (2000). "Maximal Likelihood refinement. It works, but why?". 19th European Crystallographic Meeting, Abstract book, 25th-31st August 2000 Nancy, France, 201.

  • Lunin, V. Y. & Urzhumtsev, A. G. (2000). "Maximal Likelihood refinement. It works, but why?". Acta Cryst. A56, S, S201.

  • Lunina, N., Lunin, V.Y., Podjarny, A., Ritter, S., Frey, I., Keul, J., Diederichs, K., Baumstark, M. & Urzhumtsev, A. (2000). "Structure of human low density lipoprotein (LDL) at low resolution: structure determination and analysis". ECM19 Satellite Meeting "Frontiers in macromolecular crystallography", Bishenberg, August, 31-September, 3, France, 32.

  • Lunina, N.L., Lunin V.Y. & Urzhumtsev A.G. (2000). "Use of map connectivity properties in macromolecular ab-initio phasing". 19th European Crystallographic Meeting, Abstract book, 25th-31st August 2000 Nancy, France, 62.

  • Lunina, N.L., Lunin, V.Y. & Urzhumtsev, A.G. (2000). "Use of map connectivity properties in macromolecular ab-initio phasing". Acta Cryst. A56, S, S62.

  • Ritter, S., Lunina, N.L., Lunin, V.Y., Urzhumtsev, A.G., Podjarny, A.D., Frey, I., Diederichs, K. & Baumstark, M.W. (2000). "Crystallization and structure determination of human low density lipoprotein (LDL) at low resolution, using ab initio phases". 19th European Crystallographic Meeting, Abstract book, 25th-31st August 2000 Nancy, France, 299.

  • Ritter, S., Lunina, N.L., Lunin, V.Y., Urzhumtsev, A.G., Podjarny, A.D., Frey, I., Diederichs, K. & Baumstark, M.W. (2000). "Crystallization and structure determination of human low density lipoprotein (LDL) at low resolution, using ab initio phases". Acta Cryst. A56, S, S299.

  • Urzhumtsev, A., Lunin, V.Y. & Lunina, N. (2000). "Density constraints and direct phasing". 19th European Crystallographic Meeting, Abstract book, 25th-31st August 2000 Nancy, France, 108.

  • Urzhumtsev, A., Lunin, V. Y. & Lunina, N. (2000). "Density constraints and direct phasing". Acta Cryst. A56, S, S108.

  • Urzhumtsev, A.G., Podjarny, A. & Lunin, V.Y. (2000). "Direct phasing at low resolution: current state and expectations". Millennium Symposium on Structural Biology, 26-29 March 2000, Heidelberg, Germany, Collected Abstracts, 103.

  • Lunin, V.Y., Urzhumtsev, A.G. & Podjarny, A.D. (1999). "Low resolution phasing. Achievements and perspectives". XVIII Congress and General Assembly of IUCr, Glasgow, Scotland, UK, August 4-13, 1999. Collected Abstracts, 121.

  • Lunina, N.L., Lunin, V.Y. & Urzhumtsev, A.G. (1999). "The connectivity-based choice in macromolecular low resolution ab-initio phasing". XVIII Congress and General Assembly of ICU, Glasgow, Scotland, UK, August 4-13, 1999. Collected Abstracts, 123.

  • Petrova, T.E., Lunin, V.Y. & Podjarny, A.D. (1999). "Ab-initio calculation of envelopes for macromolecules by maximization of likelihood". XVIII Congress and General Assembly of IUCr, Glasgow, Scotland, UK, August 4-13, 1999. Collected Abstracts, 183.

  • Urzhumtsev, A.G., Lunina, N. & Lunin, V. (1999). "Proprietes Topologiques et Phasage Direct". GTBio-99, 12-15 Oct. 1999,Hourtin (Bordeaux, France), CO31.

  • Lunin, V.V., Lunin, V.Yu., Blagova, E.V., Shlyapnikov, S.V., Levdikov, V.M. & Mikhailov, A.M. (1998). "Serratia marcescens endonuclease refined structure of enzyme at 1.7A resolution and mechanism of its action". Eighteenth European Crystallographic Meeting, Praha, Czech Republic, August 15-20, 1998. Abstracts (B), 472-473.

  • Lunin, V.Yu., Lunina, N.L., Petrova, T.E., Urzhumtsev, A.G. & Podjarny A.D. (1998). "Very low resolution ab-initio phasing. Problems and advances". Eighteenth European Crystallographic Meeting, Praha, Czech Republic, August 15-20, 1998. Abstracts (A), 131-132.

  • Petrova, T.E., Lunin, V.Y. & Podjarny, A.D. (1998). "Likelihood base search of the center of a macromolecular object". Eighteenth European Crystallographic Meeting, Praha, Czech Republic, August 15-20, 1998. Abstracts (B), 481-482.

  • Podjarny, A.D., Lunina, N., Urzhumtsev, A.G., Vernoslova, E.A., Petrova, T. & Lunin, V. (1998). "Ab-initio phasing at 30 A of the t50S ribosomal particle with the Few Atoms Model method". ACA Annual Meeting, Arlington, Virginia, July 18-23, 1998, 11.03.08, 74.

  • Podjarny, A.D., Urzhumtsev, A.G., Vernoslova, E.A., Petrova, T., Lunina, N. & Lunin V. (1998). "Recent advances on the application of the few atom model method to the T50S ribosomal particle". Association Francaise de Cristallographie, AFC98, Orleans, 24-27 fevrier 1998, BCG-A02.

  • Skovoroda, T.P. & Lunin, V.Y. (1998). "Statistical properties of phase error estimates obtained on the bas marginal likelihood maximization". Eighteenth European Crystallographic Meeting, Praha, Czech Republic, August 15-20, 1998. Abstracts (B), 482.

  • Urzhumtsev, A.G., Lunin, V.Y. & Lunina, N.L. (1998). "Seminvariant density decomposition and connectivity analysis in the low resolution macromolecular phasing". Eighteenth European Crystallographic Meeting, Praha, Czech Republic, August 15-20, 1998. Abstracts (A), 482-483.

  • Lunin, V.Yu. (1997). "Likelihood Based Choice of Priors in Statistical Approaches to the Phase Problem". In Direct Methods for Solving Macromolecular Structures, Lecture Notes, Erice, 22 May-2 June 1997, 457.

  • Lunin, V.Yu., Lunina, N.L., Petrova, T.E., Urzhumtsev, A.G. & Podjarny, A.D. (1997). "A generalized likelihood and the phase cluster choice problem". In Direct methods for solving macromolecular structures, Lecture Notes, Erice, Italy, May 22 - June 02 1997, 485.

  • Lunin, V.Yu., Urzhumtsev, A.G. & Podjarny, A.D. (1997). "The use of generalized likelihood based approach in low-resolution ab-initio phasing". Seventeenth European Crystallographic Meeting, Collected abstracts, Lisboa - Portugal 24/28 August 1997, 53.

  • Urzhumtsev, A.G., Lunin, V.Yu. & Podjarny, A.D. (1997). "Low Resolution Phasing: After First Images". Workshop "Validation and refinement of macromolecular structures", Abstracts, Porto, Portugal, August 29-30, 1997.

  • Lunin, V.Yu. & Skovoroda, T.P. (1997). "Statistical Properties of Phase Error Estimates Obtained on the Base of a Marginal Likelihood Maximization". Workshop "Validation and refinement of macromolecular structures", Abstracts, Porto, Portugal, August 29-30, 1997.

  • Lunin, V.Yu., Urzhumtsev, A.G. & Podjarny, A.D. (1997). "The solution of the low-resolution phase problem in protein crystallography". National conference on the use of X-ray, synchrotron radiations, neutrons and electrons in material studies, Dubna, 25-29 May 1997, 212. (In Russian)

  • Ivanov, M.E., Petrova, T.E. & Lunin, V.Yu. (1997). "The approximation of a prior distribution of atomic coordinates in macromolecular crystalls by the gradient of the likelihood function". National conference on the use of X-ray, synchrotron radiations, neutrons and electrons in material studies, Dubna, 25-29 May 1997, 218. (In Russian)

  • Lunina, N.L., Lunin, V.Yu. & Urzhumtsev, A.G. (1997). "Density growing" - a new approach to local improvement of Fourier syntheses". National conference on the use of X-ray, synchrotron radiations, neutrons and electrons in material studies, Dubna, 25-29 May 1997, 222. (In Russian)

  • Skovoroda, T.P. & Lunin, V.Yu. (1997). "The reliability of figures of merit defined on the base of maximal likelihood". National conference on the use of X-ray, synchrotron radiations, neutrons and electrons in material studies, Dubna, 25-29 May 1997, 225. (In Russian)

  • Lunin, V.V., Lunin, V.Yu., Blagova, E.V., Levdikov, V.M., Shliapnikov, S.V. & Mikhailov, A.M. (1997). "The atomic structure of endonuclease Sm1 at 1.7 ? resolution". National conference on the use of X-ray, synchrotron radiations, neutrons and electrons in material studies, Dubna, 25-29 May 1997, 221. (In Russian)

  • Lunin, V.Yu. (1996). "Low-resolution ab-initio phasing with Monte-Carlo and clusterization techniques". XVII Intern.Cryst.Congr., Seattle, USA, August 8-17, 1996, Coll.Abstr.,C-63.

  • Urzhumtsev, A.G., Lunin, V.Yu., Vernoslova, E.A., Urzhumtseva, L.M. & Podjarny, A.D. (1995). "La methode FAM pour le phasage ab-initio: Applications". AFC95, 24-27 Jan. 1995, Grenoble, BL15.

  • Lunin, V.Yu., Urzhumtsev, A.G., Vernoslova, E.A., Lunina, N.L., Petrova, T.E. & Podjarny, A.D. (1995). "La methode FAM pour le phasage ab-initio: Theorie". AFC95, 24-27 Jan. 1995, Grenoble, P07a.

  • Lunin, V.Yu. & Skovoroda, T.P. (1995). "R-free based maximum likelihood estimates of phase errors". 4th European Workshop on Crystallography of Biological Macromolecules, Como (Italy), May 21-25, O43.

  • Lunin, V.Yu., Lunina, N.L., Petrova, T.E., Vernoslova, E.A., Urzhumtsev, A.G. & Podjarny, A.D. (1995). "On the ab-initio solution of the phase problem for macromolecules at very low resolution: the Few Atoms Models method". 4th European Workshop on Crystallography of Biological Macromolecules, Como (Italy), May 21-25, O19.

  • Urzhumtsev, A.G., Lunin, V.Yu., Vernoslova, E.A., Lunina, N.L., Petrova, T.E., Navaza, J. & Podjarny, A.D. (1994). "Very low resolution phasing with simple models". 15th Eur. Cryst. Meeting, Dresden, Germany, 28.8-2.9/1994, Coll.Abstr., R.Oldenbourg Verlag, Munchen, 217.

  • Lunin, V.Yu., Lunina, N.L., Petrova, T.E., Vernoslova, E.A., Urzhumtsev, A.G. & Podjarny, A.D. (1994). "A Monte Carlo Approach to low resolution phasing in protein crystallography". ACA Annual Meeting, June 25 - July 1, 1994, INFORUM, Atlanta, Georgia, Atlanta Convention Center, 178.

  • Lunin, V.Yu. (1993). "Electron density histograms and the phase problem". Acta Cryst. A49, S MS-02.01.05.

  • Brazhnikov, E., Chirgadze, Yu., ?varsson, A., Svensson, A. & Lunin, V. (1993). "The Similarity of results obtained by Solvent Flattening and Low-Resolution Phase retrieval for the Improvement of Protein Electron Density Map". 3rd European workshop on crystallography of biological macromolecules, Como (Italy), May 24-8 1993, M4.

  • Lunin, V.Yu., Urzhumtsev, A.G. & Skovoroda, T.A. (1990). "Direct low-resolution phasing in protein crystallography". 16th Int.School on Crystallography, Erice, Italy, 18-29 April, 1990, Coll.Abstr.

  • Lunin, V.Yu., Urzhumtsev, A.G. & Skovoroda, T.A. (1990). "Direct low-resolution phasing in protein crystallography". Acta Cryst., A46, S, C-113.

  • Chirgadze, Yu.N., Vernoslova, E.A., Nikonov, S.V., Sergeev, Yu.V., Brazhnikov, E.V., Fomenkova, N.P., Lunin, V.Yu. & Urzhumtsev, A.G. (1989). "Refined structure of calf lens ?-crystallin IIIb at 2.5A resolution". XIIth European Cryst. Meeting, Moscow, USSR, August 1989, Coll.Abstr., 2, 362.

  • Urzhumtsev, A.G., Lunin, V.Yu. & Vernoslova, E.A. (1989). "FROG - new refinement program". XIIth European Cryst. Meeting, Moscow, USSR, August 1989, Coll.Abstr., 3, 193.

  • Lunin, V.Yu. & Skovoroda, T.P. (1989). "Frequency analysis - new approach to phase improvement in protein crystallography". XIIth European Crystallographic Meeting, Moscow 1989, Coll.Abstr., 3, 146.

  • Urzhumtsev, A.G., Lunin, V.Yu. & Luzyanina, T.B. (1986). "Macromolecular position determination with a noisy synthesis at low resolution". Xth European Cryst. Meeting,Wroclaw, Poland, Coll.Abstr., 1A-01, 51-52.

  • Chirgadze, Yu.N., Nevskaya, N.A., Lunin, V.Yu. & Urzhumtsev, A.G. (1984). "Molecular structure of calf lens protein ?-crystalline at 2.7A resolution". 16-th FEBS Conference, Moscow, 1984, Coll.Abstr., 232.

  • Lunin, V.Yu. & Urzhumtsev, A.G. (1984). "Program construction for refinement of the atomic structure of macromolecules based on the fast differentiation algorithm". Acta Cryst., A40, S, C-18.

  • Lunin, V.Yu., Urzhumtsev, A.G., Chirgadze, Yu.N., Fomenkova, N.P. & Nevskaya, N.A. (1984). "Crystal structure of the calf lens protein gamma-crystalline III". Acta Cryst., A40, S, C-32.

  • Vazina, A.A., Kozlov M.A., Korystova, A.F., Kraizman, V.L., Shelestov, V.M., Vernoslov, S.E. & Lunin V.Yu. (1982). "Methodological aspects of using EXAFS for protein structure determination". The First All-Union Congress on Biophysics, Moscow 1982, Coll.Abstr., III, 215. (In Russian)

  • Fomenkova, N.P., Chirgadze, Yu.N., Sergeev, Yu.V., Nevskaya, N.A., Nikonov, S.V., Lunin, V.Yu. & Urzhumtsev, A.G. (1982). "g-crystalline structure: the pathway, domains space homology, functional groups". The First All-Union Congress on Biophysics, Moscow 1992, Coll.Abstr., 17. (In Russian)

  • Chirgadze, Yu.N., Sergeev, Yu.V., Fomenkova, N.P., Lunin, V.Yu. & Urzhumtsev, A.G. (1981). "The structure ?-crystalline IIIb from calf lens". Acta Cryst., A37, S, C-40.

  • Chirgadze, Yu.N., Oreshin, V.D., Sergeev, Yu.V., Fomenkova, N.P., Nikonov, S.V. & Lunin, V.Yu. (1980). "Structure of gamma-crystallines II and IIIb from calf lens at 5A resolution". V USSR Symp. on chemistry and physics of proteins and peptides, Coll.Abstr., Baku 1980, 183. (In Russian)

The full texts of papers

Papers in mathematics

  • Lunin V.Yu. (1978). "On asymptotic behaviour of solutions of the first boundary value problem for quay-linear partial differential equations with a small parameter." Proceedings of the conference on partial differential equations after I.G.Petrovsky, Moscow, MSU, 366-367. (In Russian)

  • Lunin,V.Yu. (1977). "On the existence of a finite boundary layer for a class of boundary value problems containing a small parameter". Uspehi Matem.Nauk (SSSR), XXXII, 1(193), 171-172. (In Russian)

  • Lunin, V.Yu. (1977). "On uniform approximation by the leading term in the asymptotic expansion of the solution of the first boundary value problem for a class of quasi-linear elliptic equations ". Vestnik MGU (SSSR), Math.& Mech., 3, 46-57. (In Russian)

  • Lunin, V.Yu. (1976). "On the asymptotic behaviour of solutions of the first boundary value problem for quasi-linear elliptic equations of the second order". Vestnik MGU (SSSR), Math.& Mech., 3, 43-51. (In Russian)

  • Lunin, V.Yu. (1976). "The construction of the leading term of the asymptotic solution of the first boundary value problem for a class of quasi-linear elliptic equations". Vestnik MGU (SSSR), Math.& Mech., 5, 81-87. (In Russian)

  • Lunin,V.Yu. (1974). "Estimates of solutions of abstract parabolic equations". Uspehi Matem.Nauk (SSSR), XXIX, 3(171), 213-214. (In Russian)

  • Lunin,V.Yu. (1973). "Estimates for solutions of abstract parabolic equations with non-linear perturbations". Vestnik MGU (SSSR), Math.& Mech., 6, 56-63. (In Russian)

  • Lunin, V.Yu. (1976). "On asymptotic behaviour of the solution of the first boundary value problem for quasi-linear partial differential equations containing a small parameter". The resume of Ph.D. Theses, Moscow State University, Dep.of Mathematics. (In Russian)

  • Lunin, V.Yu. (1976). "On asymptotic behaviour of the solution of the first boundary value problem for quasi-linear partial differential equations containing a small parameter". Ph.D. Theses, Moscow State University, Dep.of Mathematics. (In Russian)

The full texts of papers