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Department of Prospective Information Technologies

Group for Computer Modelling of Nanostructures and Biosystems

Main publications of the Gropup
  • Bystrov V.S., Bdikin I., Heredia A., Pullar R.C., Mishina E., Sigov A.S. and Kholkin A.L. Piezoelectricity and Ferroelectricity in Biomaterials: From Proteins to Self-assembled Peptide Nanotubes. In: Piezoelectric Nanomaterials for Biomedical Applications Ed. Ciofani G., Menciassi A. Berlin Heidelberg: Springer-Verlag. 2012. 187-211. ISBN 978-3-642-28043-6.


  • Bystrov V.S., Paramonova E.V., Dekhtyar Y., Katashev A., Polyaka N., Bystrova A.V., Sapronova A.V., Fridkin V.M., Kliem H., Kholkin A.L. Computational Studies of PVDF and P(VDF-TrFE) Nanofilms Polarization During Phase Transition Revealed by Emission Spectroscopy. Mathematical Biology and Bioinformatics. 2011. V. 6. ¹ 2. P. t14-t35.


  • Bystrov V.S., Paramonova E., Dekhtyar Yu., Katashev A., Karlov A., Polyaka N., Bystrova A.V., Patmalnieks A., Kholkin A.L. Computational and experimental studies of size and shape related physical properties of hydroxyapatite nanoparticles. J. Phys.: Condens. Matter. 2011. 23. 065302. doi:10.1088/0953-8984/23/6/065302


  • Bdikin I., Bystrov V., Kopy S., Lopes R.P.G., Delgadillo I., Gracio J., Mishina E., Sigov A., and Kholkin A.L. Evidence of ferroelectricity and phase transition in pressed diphenylalanine peptide nanotubes. Appl. Phys. Lett. 2012. 100 (4).


  • Bystrov V., Paramonova E., Bystrova N., Sapronova A., Filippov S. Computational Molecular Nanostructures and Mechanical Properties of Hydroxyapatite.//In: The 3rd Symposium "Micro- and Nanostructures of Biological Systems", June 7-8, 2004, Halle (Saale), Germany. - Martin Luther University Halle-Wittenberg, 2004.- pp. 64-68.


  • N.K.Bystrova, V.S.Bystrov, M.M.Marinina. Mathematical modeling and computer imaging of non-linear phenomena in biomedical systems and signals.// Technology and Health Care (International Journal, IOS Press, The Netherlandes). 2004, Vol. 12, No. 2, pp. 106-108. (Special issue: Proceedings of the 7th Conference of the European Society for Engineering and Medicine (ESEM) - ESEM2003. September 18-21, 2003, Halle (Saale), Germany.)


  • Bystrova N., Bystrov V., Marinina M. Mathematical Modeling and computer imaging of non-linear phenomena in biomedical systems and signals.// In: Programme and Abstracts of the 7th Conference of the European Society for Engineering and Medicine (ESEM) - ESEM2003. September 18-21, 2003, Halle (Saale), Germany. Martin Luther University Halle-Wittenberg, 2003. p.27.


  • V. Bystrov, M. Green, A. Sapronova. Proton transfer in hydrogen-bonded ferroelectrics and related systems. // J. of Conference abstracts European Meeting on Ferroelectricity 2003 - EMF-2003, 3 - 8 August 2003, Cambridge, U. K.). 2003. V.8, N1, p. 92 (2003). abs 2073.


  • V. Bystrov, N. Bystrova, Yu. Dekhtayr, G. Ovtchinnikova, T. Baumuratova. Non-linear Ferroelectric-like Models in Biology, Medicine and Nanothechnology. // J. of Conference abstracts (European Meeting on Ferroelectricity 2003 - EMF-2003, 3 - 8 August 2003, Cambridge, U. K.). 2003. V.8, N1, p. 92 (2003). abs 2372.


  • A. Sapronova, V. Bystrov, M. E. Green. Ion channel gating and proton transport. // Journal of Molecular Structure: THEOCHEM. 25 July 2003, Vol.630, Issue 1-3, pages 297-307. http://www.ScienceDirect.com - Journal of Molecular Structure THEOCHEM Ion channel gating and proton transport.htm


  • A.Sapronova, V.S.Bystrov, M.E.Green. Water, Proton trasnfer, and Hydrogen bonding in ion channel gating. Frontiers in Bioscience, 2003, September 1, v. 8, pp. s1356-1370. Full text http://www.bioscience.org/current/vol8.htm


  • Bystrov V.S., Bystrova N.K. Bioferroelectricity and Optical Properties of Biological Systems. // Proceedings of SPIE (International Society for Optical Engineering). "Advanced Optical Materials and Devices" (The 3rd International Conference AOMD-3, August 19-22, 2002, Riga, Latvia). 2003. Vol. 5122, pp. 132-136.


  • M.E.Green, V.S.Bystrov, A.V.Sapronova. Protons and Ion Channel Gating: Hypothesis, and some calculations. // In: Abstract of Conference "Exploring Modern Computational Chemistry" (EMC2). July 31 - August 2, 2002. Nottingham, England.(poster).


  • A.V.Sapronova, V.S.Bystrov, M.E.Green. Ion Channel Gating: Calculations on the role of protons in gating current and controlling conformational changes. // In: Abstract of Conference "6th World Congress of Theoretically Oriented Chemists" (WATOC’02). Theory, Computation and Information Science in Chemistry, Biochemistry and Material Sciences. 4-9 August, 2002. Lugano, Switzerland. abstract C45 (oral talk).


  • V.Bystrov, N. Bystrova. Bioferroelectricity: Newq results and Applications. // In: 7th INTERNATIONAL SYMPOSIUM ON FERROIC DOMAINS AND MESOSCOPIC STRUCTURES.- Peninsula of Giens (French Riviera), September 15 - 19, 2002. Abstr. A6T05.


  • V.Bystrov, V.Fridkin, G.Vizdrik, T.Tazieva, A.Sapronova. Dynamical Processes in Hydrogen-bonded Ferroelectrics and Two-Dimensional Ferroelectrics Films.// In: Abstracts Book of ISFD-7: 7th INTERNATIONAL SYMPOSIUM ON FERROIC DOMAINS AND MESOSCOPIC STRUCTURES. Peninsula of Giens (French Riviera), September 15 - 19, 2002. Abstr. A6P01.


  • V. Bystrov, A. Sapronova, M.Green. Mathematical Modeling of Ion Channels. // In: Book of Abstracts of V International Congress of Mathematical Modeling. Vol. 1. September 30 - October 6, 2002. Dubna, Moscow region, Russia. Joint Institute of Nuclear Research: Dubna, 2002, p.193.


  • V. Bystrov, T. Tazieva, A. Sapronova, N. Bystrova. Non-linear dynamical models of transitional processes in the biological and ferroelectric-like systems. // In: Scientific Proceedings of Riga Technical University. Ser. 6. Issue 9. Biomedical Engineering and Microtechnologies. RTU: Riga, 2002. pp. 155-158.


  • V. Bystrov, T. Tazieva, A. Sapronova, N. Bystrova. Non-linear dynamical models of transitional processes in the biological and ferroelectric-like systems. // In: Programme and Abstracts of International Scientific Conference "Biomedical Engineering and Microtechnologies". October 10-14, 2002. Riga, Latvia. p.14.


  • V. Bystrov, N. Bystrova, G. Ovtchinnikova, Yu. Pirogov. Bioferroelectricity and biomedicine: new results and approaches. // In: Programme and Abstracts of International Scientific Conference "Biomedical Engineering and Microtechnologies". October 10-14, 2002, Riga, Latvia. p.11.


  • Bystrov V.S., Bystrova N.K. Bioferroelectricity and Optical Properties of Biological Systems. // In: Programme and Abstracts of AOMD-3. The 3rd International Conference "Advanced Optical Materials and Devices". August 19-22, 2002. Riga, Latvia. p.86.


  • Bystrov V., Green M., Sapronova A., Ovtchinnikova G., Tazieva T., Soloshenko A., Shaiko M., Zapol B. Hydrogen bonds and Proton transfer in Ferroelectrics and related materials (molecular chains, proteins, DNA): Ab Initio GAUSSIAN-98 calculations and soliton models. // Proceedings of the Thirteenth IEEE International Symposium on Applications of Ferroelectrics, Proc.ISAF XIII (from IFFF-2002: International Joint Conference on the Applications of Ferroelectrics 2002 , May 28 - June 1, 2002. - Nara, Japan.). IEEE: Piscataway, 2002. pp. 41-44.


  • Bystrov V., Bystrova N., Ovtchinnokova G., Pirogov Yu., Dekhtyar Yu. Bioferroelectricity and Biomedicine: New results and approaches. // Proceedings of the Thirteenth IEEE International Symposium on Applications of Ferroelectrics - Proc.ISAF XIII (from IFFF-2002: International Joint Conference on the Applications of Ferroelectrics 2002 , May 28 - June 1, 2002. Nara, Japan.). IEEE: Piscataway, 2002. pp. 69-70.


  • Bystrov V., Bystrova N., Ovtchinnokova G., et al. Bioferroelectricity and Biomedicine: New results and approaches. // In: Abstract Book of IFFF-2002. International Joint Conference on the Applications of Ferroelectrics 2002. May 28 - June 1, 2002. Nara, Japan. p.180.


  • Bystrov V., Green M., Sapronova A., et al. Hydrogen bonds and Proton transfer in Ferroelectrics and related materials (molecular chains, proteins , DNA): Ab Initio GAUSSIAN-98 calculations and soliton models. // In: Abstract Book of IFFF-2002. International Joint Conference on the Applications of Ferroelectrics 2002. May 28 - June 1, 2002. Nara, Japan. p. 101.


  • Sapronova A., Bystrov V., Green M. Proton transport as a possible source of gating current in voltage gated channels. // Biophys. J., 2002, Vol. 82, No.1, Part 2 of 2, p. 184a. (Abstracts of 42-th Annular Biophys. Soc. Meeting, San-Francisco, CA, USA, February 2002. Abstr. No 567.).


  • Bystrov V.S., Tazieva T.R., Ovtchinikova G.I., Pirogov Yu.A., Soloshenko A.N. Microwave impact on phase transition in hydrogen-bound ferroelectrics. //Physics of Vibrations, 2001, Vol.9, No. 4, pp. 268-273.


  • H.R.Leuchtag and V.S.Bystrov. BioFerroelectricity. Ferroelectricity Newsletter, Spring 2001, pp.7-8. http://www.sp.nps.navy.mil/projects/ferro/ferro/html


  • Vladimir S. Bystrov, Tatyana R. Tazieva, Alla V. Sapronova, Vladislav A. Zavorov, Boris P.Zapol. BIOFERROELECTRICITY: SOLITON AND QUANTUM NON-LINEAR DYNAMICS OF HYDROGEN-BONDED SYSTEMS // In: The Second World Congress of Latvian Scientists, Riga, 14-15 August, 2001. Congress Proceedings. Riga: The Latvian Academy of Sciences, 2001. 678 pages. ISBN 9984-9542-0-X. p. 346.


  • Bystrov V.S., Sapronova A.V., Tazieva T.R., Green M.E. Non-linear dynamics of proton transfer in hydrogen-bonded systems. Physics of Vibrations, 2001, Vol. 9, N 3, pp. 168-172.


  • Bystrov V.S., Ovtchinnikova G.I., Tazieva T.R., et al. Bioferroelectricity and related problems: hydrogen-bonded ferroelectric-like systems.// FERROELECTRICS, 2001, v.258, pp. 79-88.


  • Bystrov V.S., Ovtchinnikova G.I., Tazieva T.R., et al. Classical and quantum non-linear dynamics of hydrogen-bonded ferroelectric-like systems.// Abstracts of EMF-10, Madrid, Spain, 2001.- p. 378.


  • Bystrov V.S., Tazieva T.R. Non-linear Dynamics of Hydrogen-containing systems: Ferroelectrics and ion channels of biomembranes. // Physics of Vibrations, 2000, v.8, N 2, pp. 128-132.


  • Bystrov V.S. Bioferroelectricity and related problems. // In: Abstracts of the 5th Euroconference on application of polar dielectrics ECAPD-5, 2000, Riga. p.93.


  • V.S. Bystrov, G. I. Ovtchinnikova, T. R. Tazieva, A. N. Soloshenko, Yu. A. Pirogov, V. N. Novik, V. M. Fridkin. Two-component model of hydrogen-bonded ferroelectrics and biomolecular chains.//In: Abstracts of ISIF-2000 - 12th International Symposium on Integrated Ferroelectrics. March 12-15, 2000, Aachen, Germany, 2000. p. 378.


  • Bystrov V.S. Models of Proton Dynamics and Superprotonic/Ionic Conduction in Hydrogen-bonded Ferroelectrics and Related (Biological) Systems. I. Soliton dynamics in Hydrogen-bonded systems. Ferroelectric Letters, 2000, v.27, No 5-6, pp. 147-159.


  • Bystrov V.S., Tazieva T. R. Soliton Dynamics in Hydrogen-bonded systems. Physics of Vibrations, 1999, v.7., No 3, pp.149-156.


  • V.S.Bystrov and H.R.Leuchtag. Ferroelectricity in Liquid Crystals, Films, Microtubules and Voltage-Gated Ion Channels. Biophys.J. 1999, v.76, No 1, p.A330.


  • Bystrov V.S. Model of proton dynamic and superprotonic/ionic conduction in hydrogen-bonded ferroelectrics.// In: Abstracts of 9th European Meeting on Ferroelectricity. July 12-16, 1999, Praha, Czech Republic. p.314.


  • Bystrov V.S. Ferroelectricity in thin films and biological membranes.//In: Abstracts of 9th European Meeting on Ferroelectricity. July 12-16, 1999, Praha, Czech Republic., p.164.


  • V.S.Bystrov and H.R.Leuchtag, Editors. Preface. FERROELECTRICS.- Special issue "Ferroelectric and Related Models in Biological Systems". 1999, v.220, No.3-4, pp.V-VI.


  • V.S.Bystrov and H.R.Leuchtag. Theoretical Models of Conformational Transitions and Ion Conduction in Voltage-Dependent Ion Channels: Bioferroelectricity and Superionic Conduction (Review). FERROELECTRICS, 1999.- Spec.issue. - v.220., No.3-4, pp.157-204.
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