Структура
Главная
События
Администрация
Структура
Достижения
Сотрудники
Публикации
Популярно о науке
Конференция ICMBB
История
Файловый архив
Ссылки
Контакты

Лаборатория кристаллографии макромолекул

Публикации Уржумцева А.Г.

По состоянию на 01 января 2003

Внимание! Полные тексты статей, препринтов, диссертаций могут быть найдены здесь.

Статьи в журналах

  • Urzhumtsev, A. & Urzhumtseva, L. (2002). "SF2CNS: general purpose program to calculate CNS-formatted maps easily" J. Appl. Cryst., 35, 750.
  • Lunin, V.Y., Afonine P.V. & Urzhumtsev, A.G. (2002). "Likelihood-based refinement. I. Irremovable model errors". Acta Cryst. A58, 270–282.
  • Lunin, V.Y., Urzhumtsev, A. & Bockmayr, A. (2002). "Direct phasing by binary integer programming". Acta Cryst. A58, 283–291.
  • Urzhumtsev, A. & Urzhumtseva, L. (2002). "Multiple rotation function". Acta Cryst, D58, 2066-2075.
  • Fokine, A. & Urzhumtsev, A.G. (2002). "On the use of low resolution data for translation search in molecular replacement". Acta Cryst., A58, 72-74.
  • Fokine, A. & Urzhumtsev, A. (2002). "Flat bulk solvent model: getting optimal parameters". Acta Cryst., D58 , 1387-1392.
  • Urzhumtseva, L. & Urzhumtsev, A. (2002). "COMPANG : program for comparative analysis of rotation angles". J. Appl.Cryst., 35, 644-647.
  • Lunin, V.Y., Lunina, N.L., Ritter, S., Frey, I., Berg, A., Diderichs, K., Podjarny, A.D., Urzhumtsev, A. & Baumstark M.W. (2001). "Low-resolution data analysis for low-density lipoprotein particle". Acta Cryst., D57, 108-121.
  • Urzhumtsev, A.G. & Lunin, V.Y. (2001). "Fast differentiation algorithm and efficient calculation of the exact matrix of second derivatives". Acta Cryst.. A57, 451-460.
  • Lunin, V.Y., Lunina, N.L. & Urzhumtsev, A.G. (2000). "Connectivity properties of high-density regions and ab initio phasing at low resolution". Acta Cryst. A56, 375-382.
  • Lunin, V.Y., Lunina, N.L., Petrova, T.E., Skovoroda, T.P., Urzhumtsev, A.G. & Podjarny, A.D. (2000). "Low-resolution ab initio phasing: problems and advances". Acta Cryst. D56, 1223-1232.
  • Urzhumtsev, A.G., Lunina, N.L., Skovoroda, T.P., Podjarny, A.D. & Lunin, V.Y. (2000). "Density constraints and low-resolution phasing". Acta Cryst. D56, 1233-1244.
  • Brino, L., Urzhumtsev, A.G., Mousli, M., Mitschler, A., Bergdoll, M., Oudet, P. & Moras, D. (2000). "Dimerization of Escherichia coli DNA-gyrase B provides a structural mechanism for activating the ATPase catalytic center". J.Biol.Chem., 275, 9468-9475.
  • Urzhumtseva, L.M. & Urzhumtsev, A.G. (2000). "Tcl/Tk based programs. IV. CALCRYS: crystallographic calculator". J.Appl. Cryst., 33, 992-992.
  • Lunin, V.Y., Lunina, N.L. & Urzhumtsev, A.G. (1999). "Seminvariant density decomposition and connectivity analysis and their application to very low resolution macromolecular phasing" Acta Cryst. A55, 916-925.
  • Urzhumtseva, L.M. & Urzhumtsev, A.G. (1999) "Tcl/Tk based programs. III. CRITXPL: graphical analysis of the X-PLOR refinement log-files". J.Appl. Cryst., 32, 376-377.
  • Lunin, V.Yu., Lunina, N.L., Petrova, T.E., Urzhumtsev A.G. & Podjarny A.D. (1998). "On the Ab initio> solution of the Phase Problem for Macromolecules at Very Low Resolution. II. Generalized Likelihood Based Approach to Cluster Discrimination". Acta Cryst. D54, 726-734.
  • Urzhumtsev, A., Tête-Favier, F., Mitschler, A., Barbanton, J., Barth, P., Urzhumtseva, L., Biellmann, J-F., Podjarny, A.D. & Moras, D. (1997). "A 'specificity' pocket inferred from the crystal structures of the complexes of aldose reductase with the pharmaceutically important inhibitors tolrestat and sorbinil". Structure, 5, 5, 601-612.
  • Urzhumtseva, L.M. & Urzhumtsev, A.G. (1997). "Tcl/Tk-based programs. II. CONVROT: a program to recalculate different rotation descriptions". J.Appl.Cryst., 30, 402-410.
  • Urzhumtsev, A.G. (1997). "Local improvement of electron density maps". Acta Cryst., D53, 540-543.
  • Podjarny, A.D., Howard, E.I., Urzhumtsev, A.G. & Grigera, J.R. (1997). "A Multicopy Modeling of the Water Distribution in Macromolecular Crystals". Proteins, 28, 303-312.
  • Urzhumtsev, A.G., Skovoroda, T.P. & Lunin, V.Yu. (1996). "A procedure compatible with X-PLOR for the calculation of electron-density maps weighted using an R-free-likelihood-based approach". J.Appl.Cryst., 29, 741-744.
  • Urzhumtsev, A.G., Vernoslova, E.A. & Podjarny, A.D. (1996). "Approaches to Very Low Resolution Phasing of the Ribosome 50S particle from Thermus thermophilus by the Few-Atoms-Models and Molecular-Replacement Methods". Acta Cryst., D52,1092-1097.
  • Lunin, V.Yu., Lunina, N.L., Petrova, T.E., Vernoslova, E.A., Urzhumtsev, A.G. & Podjarny, A.D. (1995). "On the ab-initio Solution of the Phase Problem for Macromolecules at Very Low Resolution: the Few Atoms Model Method". Acta Cryst., D51, 896-903.
  • Urzhumtsev, A.G. & Podjarny, A.D. (1995). "On the Solution of the Molecular Replacement Problem at Very Low Resolution: Application to Large Complexes". Acta Cryst., D51, 888-895.
  • Tete-Favier, F., Barth, P., Mitchler, A., Podjarny, A.D., Rondeau, J.-M., Urzhumtsev, A., Biellmann, J.-F. & Moras, D. (1995). "Aldose Reductase from Pig Lens". European Journal of Medicinal Chemistry, 30, S, 589-603.
  • Urzhumtsev, A.G. & Podjarny, A.D. (1994). "Programs for translation searches with two independent models simultaneously". J.Appl.Cryst., 27, 122-124.
  • Chirgadze, Yu.N., Nevskaya, N.A., Vernoslova, E.A., Nikonov, S.V., Sergeev, Yu.V., Brazhnikov, E.V., Fomenkova, N.P., Lunin, V.Yu., Urzhumtsev, A.G. (1991). "Crystal structure of calf eye lens gamma-crystalline IIIb at 2.5A resolution: its relation to function". Experimental Eye Research, 53, 295-304.
  • Моргунова Е.Ю., Михайлов А.М., Уржумцев А.Г., Вайнштейн Б.К. (1992). "Строение капсида CMtV при разрешении 6А в кристаллическом состоянии". Кристаллография, 37, 2, 396-404.
  • Чиргадзе Ю.Н., Бражников Е.В., Никонов С.В., Фоменкова Н.П., Гарбер М.Б., Уржумцев А.Г., Лунин В.Ю., Чиргадзе Ю.Н., Некрасов Ю.В. (1991). "Кристаллическая структура рибосомного фактора G из бактерий Thermus Thermophilus при низком разрешении". Доклады АН СССР, 320, в.2, 488-491.
  • Urzhumtsev, A.G. (1991). "How to calculate planarity restraints". Acta Cryst., A47, 723-727.
  • Urzhumtsev, A.G. (1991). "Low-resolution phases: influence on SIR-syntheses and retrieval with double-step filtration". Acta Cryst., A47, 794-801.
  • Lunin, V.Yu., Urzhumtsev, A.G. & Skovoroda, T.A. (1990). "Direct low-resolution phasing from electron-density histograms in protein crystallography". Acta Cryst., A46, 540-544.
  • Лобсанов Ю.Д., Плетнев В.З., Втюрин Н.Н., Лубнин М.Ю., Мокульский М.А., Уржумцев А.Г., Лунин В.Ю., Лузянина Т.Б. (1990). "Рентгеноструктурные исследования комплекса лектина из гороха с углеводом при разрешении 2,4А. I. Атомная модель". Биоорганическая химия, 16, 12б 1589-1598.
  • Urzhumtsev, A.G., Lunin, V.Yu. & Luzyanina, T.B. (1989). "Bounding a Molecule in a Noisy Synthesis". Acta Cryst., A45, 34-39.
  • Urzhumtsev, A.G., Lunin, V.Yu. & Vernoslova, E.A. (1989). "FROG - high-speed restraint-constraint refinement program for macromolecular structure". J.Appl.Cryst., 22, 500-506.
  • Чиргадзе Ю.Н., Невская Н.А., Фоменкова Н.П., Никонов С.В., Сергеев Ю.В., Бражников Е.В., Гарбер М.Б., Лунин В.Ю., Уржумцев А.Г., Вернослова Е.А. (1986). "Пространственная структура гамма-кристаллина IIIb из хрусталика глаза теленка при разрешении 2,5Ǻ". Доклады АН СССР, 290, 2, 492-495.
  • Lunin, V.Yu., Urzhumtsev, A.G., Vernoslova, E.A., Chirgadze, Yu.N., Nevskaya, N.A. & Fomenkova, N.P. (1985). "Phase Improvement in Protein Crystallography Using a Mixed Electron Density Model". Acta Cryst., A41, 166-171.
  • Lunin, V.Yu. & Urzhumtsev, A.G. (1985). "Program construction for macromolecule atomic model refinement based on the fast Fourier transform and fast differentiation algorithms". Acta Cryst., A41, 327-333.
  • Lunin, V.Yu. & Urzhumtsev, A.G. (1984). "Improvement of Protein Phases by Coarse Model Modification". Acta Cryst., A40, 269-277.
  • Лунин В.Ю. & Уржумцев А.Г. (1983). "Повышение разрешения карт электронной плотности белков путем уточнения модельной структуры. I. Численные эксперименты". Кристаллография, 28, в.2, 310-315.

Статьи в сборниках

  • Lunin, V.Y., Urzhumtsev, A. & Bockmayr, A. (2002). "Direct phasing by Binary integer programming and its use for envelope determination". CCP4 Newsletter on Protein Crystallography, 40_12.
  • Afonine, P., Lunin, V.Y. & Urzhumtsev, A. (2002). "Search of the optimal strategy for refinement of atomic models". CCP4 Newsletter on Protein Crystallography, 40_14.
  • Fokine, A. & Urzhumtsev, A.G. (2002). "Bulk solvent correction for yet unsolved structures". CCP4 Newsletter on Protein Crystallography, 40.
  • Afonine, P., Pichon-Pesme, V., Muzet, N., Lecomte, C. & Urzhumtsev, A. (2002). "Modelling of bond electrons by Gaussian scatters at subatomic resolution". CCP4 Newsletter on Protein Crystallography, 41.
  • Afonine, P., Lunin, V.Y. & Urzhumtsev, A.G. (2001). "Maximum-likelihood refinement of atomic models using least-squares criterion". CCP4 Newsletter on protein crystallography, 39, 52-56.
  • Urzhumtsev, A.G. & Lunin, V.Y. (2001). "Efficient calculation of the exact matrix of the second derivatives". CCP4 Newsletter on protein crystallography, 39, 60-67.
  • Lunin, V.Y., Podjarny, A.D. & Urzhumtsev, A. (2001) "Low-resolution phasing in macromolecular crystallography". In : Advances in Structure Analysis, CSCA, Prague, Czech Republic, R.Kuzel & J.Hasek, eds., 4-36.
  • Urzhumtsev, A., Podjarny, A. & Lunin, V.Y. (2001). "Ab initio phasing starting from low resolution". Invited article. Euroconference on Phasing, 23-27 June 2001, Martina Franca, Italy, 4.35-4.40.
  • Podjarny, A.D., Urzhumtsev, A. & Uson, I. (2001). "Ab-initio methods for structure determination". In : Advances in Structure Analysis, CSCA, Prague, Czech Republic, R.Kuzel & J.Hasek, eds., 1-3.
  • Fokine, A. & Urzhumtsev, A.G. (2001). "Improvement of noisy maps by bulk solvent correction". CCP4 Newsletter on Protein Crystallography, 39, 71-78.
  • Urzhumtseva, L. & Urzhumtsev, A.G. (2001). "Multiple rotation function". CCP4 Newsletter on Protein Crystallography, 39, 79-85.
  • Urzhumtsev, A.G. (2000). "Modelling of disordered solvent in macromolecular crystals". CCP4 Newsletter on Protein Crystallography, 38, 38-49.
  • Lunin, V.Y. & Urzhumtsev, A.G. (1999). "Maximal Likelihood Refinement. It works, but why?". CCP4 Newsletter on Protein Crystallography, 37, 14-28.
  • Urzhumtseva, L.M. & Urzhumtsev, A.G. (1999). "Tcl/tk based programs: crystallographic calculator". CCP4 Newsletter on Protein Crystallography, 37, 5-6.
  • Urzhumtseva, L.M. & Urzhumtsev, A.G. (1998). "Programs Tcl/Tk based crystallographic software: current state and new programs". CCP4 Newsletter on Protein Crystallography, 35, 22-24.
  • Urzhumtsev, A.G., Podjarny, A.D. & Lunin, V.Y. (1998). "On density modification at very low resolution". CCP4 Newsletter on Protein Crystallography, 35, 25-33.
  • Podjarny, A.D., Urzhumtsev, A.G. & Lunin, V.Y. (1997). "Model based low resolution phasing". In: Direct Methods for Solving Macromolecular Structures, ed. S.Fortier, NATO ASI Series C, Vol.507, 421-431.
  • Urzhumtsev, A.G., Lunin, V.Yu. & Podjarny, A.D. (1997). "Low resolution crystallographic images". In Recent Advances in Phasing, Ed. By K.S.W.Wilson, G.Davies, A.W.Ashton & S.Bailey, Proceedings of the CCP4 Study Weekend, University of York, 3-4 January, 1997, 207-214.
  • Podjarny, A.D. & Urzhumtsev, A.G. (1997). "Low resolution phasing". In Methods in Enzymology, Academic Press, San Diego., C.W.Carter, Jr., R.M.Sweet, eds. 276A, 641-658.
  • Urzhumtsev, A.G. (1996). "Density growing : a method for local improvement of electron density maps". Joint CCP4 and ESF-EACBM Newsletter on Protein Crystallography, 32b, 36-39.
  • Urzhumtsev, A.G. (1996). "Relations between some rotation descriptions for molecular replacement procedure". Joint CCP4 and ESF-EACBM Newsletter on Protein Crystallography, 32b, 43-46.
  • Urzhumtseva, L.M. & Urzhumtsev, A.G. (1996). "Tcl/Tk-based programs. I. CONFOR - user-friendly converter for crystallographic data files". Joint CCP4 and ESF-EACBM Newsletter on Protein Crystallography, 32b, 40-42.
  • Podjarny, A.D., Rees, B. & Urzhumtsev, A.G. (1996). "Density modification in X-ray crystallography". In Methods in Molecular Biology, 56: "Crystallographic Methods and Protocols", ed. C.Jones, B.Milloy, M.R.Sanderson, Totowa, New Jersey: Humana Press, 205-226.
  • Urzhumtsev, A.G. & Podjarny, A.D. (1995). "On the problem of solvent modeling in macromolecular crystals using diffraction data: 1. The low-resolution range". Joint CCP4 and ESF-EACBM Newsletter on Protein Crystallography, 31, 12-16.
  • Volkmann, N., Schlünzen, F., Urzhumtsev, A.G., Vernoslova, E.A., Podjarny, A.D., Roth, M., Pebay-Peyroula , E., Berkovitch-Yellin, Z., Zaytzev-Bashan, A. & Yonath, A. (1995). "On ab-initio phasing of ribosomal particles at very low resolution". Joint CCP4 and ESF-EACBM Newsletter on Protein Crystallography, 31, 23-32.
  • Ivanov, M.E. & Urzhumtsev, A.G. (1995). "FROG PC - a menu-based environment for atomic model refinement program on a personal computer". Joint CCP4 and ESF-EACBM Newsletter on Protein Crystallography, 31, 20-22.
  • Lunin, V.Yu., Lunina, N.L., Petrova, T.E., Vernoslova, E.A., Urzhumtsev, A.G. & Podjarny, A.D. (1994). "On the ab-initio solution of the phase problem for macromolecules at very low resolution. The Few Atoms Model method". Joint CCP4 and ESF-EACBM Newsletter on Protein Crystallography, 30, 37-44.
  • Vernoslova, E.A. & Urzhumtsev, A.G. (1994). "Current development in the program package FROG for atomic model refinement". Joint CCP4 and ESF-EACBM Newsletter on Protein Crystallography, 30, 27-28.
  • Urzhumtsev, A.G., Podjarny, A.D. & Navaza, J. (1994). "On the solution of the molecular replacement problem at very low resolution". Joint CCP4 and ESF-EACBM Newsletter on Protein Crystallography, 30, 29-36.
  • Urzhumtseva, L.M. & Urzhumtsev, A.G. (1994). "Published methods in crystallography. Reference database on personal computers". Joint CCP4 and ESF-EACBM Newsletter on Protein Crystallography, 30, 45-47.
  • Podjarny, A.D., Urzhumtsev, A.G. & Navaza, J. (1994). "On the solution of the molecular replacement problem at very low resolution: application to a ribosome model crystal". ACA Transactions, 30, 109-120.
  • Urzhumtsev, A.G. (1992). "On the reliability of atomic models in the PDB: stereochemical point of view". Joint CCP4 and ESF-EACBM Newsletter on Protein Crystallography, 27, 31-32.
  • Urzhumtsev, A.G., Lunin, V.Yu. & Vernoslova, E.A. (1990). "New refinement program FROG gives new possibilities to study macromolecular models". Proc.of the First Intern. Meeting on Structure and Chemistry of Ribonucleases, Moscow, USSR, December 1989, 410-415.
  • Уржумцев А.Г., Лунин В.Ю., Вернослова Е.А. (1989). "FROG - комплекс программ для локального уточнения атомной структуры макромолекул". В сб. "Компьютерные методы белковой инженерии", Программное обеспечение ЭВМ, Институт математики АН БССР, Институт биоорганической химии, 86, 86-97, Минск.

Препринты, программные выпуски

  • Уржумцев А.Г., Лунин В.Ю., Вернослова Е.А. (1989). "FROG - комплекс программ для локального уточнения атомной структуры макромолекул" B сб. "Компьютерные методы белковой инженерии", Программное обеспечение ЭВМ, Институт математики АН БССР, Институт биоорганической химии, 86, 86-97, Минск.
  • Уржумцев А.Г. (1985). "Использование локального усреднения при анализе изображения макромолекул на картах распределения электронной плотности". Препринт, НЦБИ АН СССР, Пущино.
  • Лунин В.Ю., Уржумцев А.Г., Вернослова Е.А., Чиргадзе Ю.Н., Фоменкова Н.П., Невская Н.А. (1984). "Использование смешанной модели электронной плотности для улучшения набора фаз в белковой кристаллографии". Препринт, НЦБИ АН СССР, Пущино.
  • Лунин В.Ю., Уржумцев А.Г. (1983). "Конструирование программ для уточнения атомной структуры макромолекул на базе алгоритмов быстрого преобразования Фурье и быстрого дифференцирования". Препринт, НЦБИ АН СССР, Пущино.
  • Уржумцев А.Г., Лунин В.Ю. (1982). "Повышение разрешения карт электронной плотности белков путем уточнения модельной структуры. Улучшение набора фаз для g-кристаллина IIIb". Препринт, НЦБИ АН СССР, Пущино.
  • Лунин В.Ю., Уржумцев А.Г. (1981). "Повышение разрешения карт электронной плотности белков путем уточнения модельной структуры. I. Описание метода". Препринт, НЦБИ АН СССР, Пущино.

Диссертации, авторефераты

  • Urzhumtsev, A. (1996). "Developpement de methodes et logiciels pour la determination de structures macromoleculaires par radiocristallographie. Applications e differents projets". Synthese d’activite scientifique, Strasbourg, 1996.
  • Уржумцев А.Г. (1985). "Использование смешанной атомной модели для улучшения наборов фаз структурных факторов при рентгеноструктурном исследовании макромолекул". Автореферат диссертации на соискание ученой степени к.ф.-м.н, Институт Кристаллографии АН СССР, Москва.
  • Уржумцев А.Г. (1985). "Использование смешанной атомной модели для улучшения наборов фаз структурных факторов при рентгеноструктурном исследовании макромолекул". Диссертация на соискание ученой степени к.ф.-м.н, Институт Кристаллографии АН СССР, Москва.

Тезисы конференций

  • Afonine, P., Lunin, V.Y. & Urzhumtsev, A. (2002). "Quadratic approximation of the maximum-likelihood criterion ". Acta Cryst., A58, S, C263 [Collected Abstracts, XIXth IUCr Congress & General Assembly, 6-15 August 2002, Geneve, Switzerland, 263]
  • Afonine, P. & Urzhumtsev, A. (2002). "Affinement par moindres carrés et par vraisemblance maximale". Journée de l’Ecole Doctorale EMMA, 23 Avril 2002, Nancy, 48-51.
  • Fokine, A., Lunina, N., Lunin, V.Y. & Urzhumtsev, A. (2002). "Bulk solvent and its role in macromolecular phasing". Acta Cryst., A58, S, C267 [Collected Abstracts, XIXth IUCr Congress & General Assembly, 6-15 August 2002, Geneve, Switzerland, 267]
  • Fokine, A & Urzhumtsev, A. (2002). "Modélisation du solvant dèsordonné dans de cristaux macromoléculaires" Journée de l’Ecole Doctorale EMMA, 23 Avril 2002, Nancy, 71-73.
  • Urzhumtsev, A., Lunin, V.Yu., Lunina, N.L., Ritter, S., Frey, I., Keul, J., Diederichs, K., Podjarny, A. & Baumstark, M. (2002). "LDL particle: Direct structure determination ". Collected Abstracts, ACA Meeting, 25-30 May 2002, San Antonio, USA, 33
  • Urzhumtsev, A., Lunina, N., Chabriere, E. & Lunin, V.Y. (2002). "Direct phasing in crystallography : connectivity of electron density maps". Z. Krist., Suppl. 19, 16. [Collected Abstracts, DGK Meeting, 4-7 March 2002, Kiel, Germany].
  • Urzhumtsev, A., Lunina, N.L. & Lunin, V.Y. (2002). "The connectivity-based choice in macromolecular low resolution ab-initio phasing". Acta Cryst., A58, S, C43 [Collected Abstracts, XIXth IUCr Congress & General Assembly, 6-15 August 2002, Geneve, Switzerland, 43].
  • Urzhumtsev, A. & Urzhumtseva, L. (2002). "Fonction de rotation multiple et logiciel COMPANG". GTBio-02, 16-19 Oct. 2002, Marseille, France, CO31.
  • Urzhumtseva, L. & Urzhumtsev, A. (2002). "Multiple rotation function for Molecular Replacement". Acta Cryst., A58, S, C78 [Collected Abstracts, XIXth IUCr Congress & General Assembly, 6-15 August 2002, Geneve, Switzerland, 43].
  • Afonine, P., Lunin, V.Y. & Urzhumtsev, A. (2001). "Maximum-likelihood refinement of atomic models using least squares criterion". XXth European Cryst.Meeting, 25-31 August 2001, Krakow, Poland, 148.
  • Afonine, P., Lunin, V.Y. & Urzhumtsev, A.G. (2001). "Simulation du critère de vraisemblance maximale par le critère de moindre carré". AFC2001 Colloque de l’Association Francaise de Cristallographie, Orsay, 3-6 juillet 2001, 97.
  • Afonine, P., Lunin, V.Y. & Urzhumtsev, A.G. (2001). "Maximum-likelihood refinement of atomic models using least-squares criterion". Euroconference on Phasing Biological Macromolecules (Phabio). Martina Franca – Italy, June 23-27, 2001, 4.47-4.51.
  • Chabriere, E., Lunina, N., Lunin, V.Y. & Urzhumtsev, A. (2001). "From low resolution to secondary structure elements". ECM-20 Abstracts, XXth European Cryst.Meeting, 25-31 August 2001, Krakow, Poland, 70.
  • Chabriere, E., Lunina, N., Urzhumtsev, A.G. & Lunin, V.Y. (2001). "Phasage ab initio par critères de connectivité: de la basse résolution aux structures secondaires". AFC2001 Colloque de l’Association Francaise de Cristallographie, Orsay, 3-6 juillet 2001, 99.
  • Fokine, A. & Urzhumtsev, A. (2001). "Improvement of electron density maps using a model for the bulk solvent". Euroconference on Phasing Biological Macromolecules (Phabio). Martina Franca – Italy, June 23-27, 2001, 4.43-4.43.
  • Fokine, A. & Urzhumtsev, A. (2001). "Amélioration des cartes de densité électronique par utilization d'un modèle du solvant mal ordonné". AFC2001 Colloque de l’Association Francaise de Cristallographie, Orsay, 3-6 juillet 2001, 96.
  • Lunin, V.Y., Urzhumtsev, A.G. & Podjarny, A.D. (2001). "Phasage ab initio à basse résolution". AFC2001 Colloque de l’Association Francaise de Cristallographie, Orsay, 3-6 juillet 2001, 95.
  • Morales, R., Viguie, N., Ferrer, J.L., Urzhumtsev, A. Fontecilla-Camps, J.C., Masson, P. & Chabriere, E. (2001). "Etude cristallographique de la paraoxonase humaine". AFC2001 Colloque de l’Association Francaise de Cristallographie, Orsay, 3-6 juillet 2001, 128.
  • Urzhumtsev, A., Podjarny, A. & Lunin, V.Y. (2001). "Ab initio phasing starting from low resolution". Euroconference on Phasing Biological Macromolecules (Phabio). Martina Franca – Italy, June 23-27, 2001, 4.35-4.40.
  • Urzhumtseva, L. & Urzhumtsev, A.G. (2001). "Multiple rotation function". Euroconference on Phasing Biological Macromolecules (Phabio). Martina Franca – Italy, June 23-27, 2001, 4.53-4.59.
  • Urzhumtseva, L. & Urzhumtsev, A.G. (2001). "Fonction de Rotation Multiple ". AFC2001 Colloque de l’Association Francaise de Cristallographie, Orsay, 3-6 juillet 2001, 98.
  • Lunin, V.Y., Lunina, N.L., Podjarny, A.D., Ritter, S., Frey, I., Keul, J., Diederichs, K., Baumstark, M.W. & Urzhumtsev, A.G. (2000). "Structure of human low density lipoprotein (LDL) at low resolution: ab initio phasing methods for structure determination". ECM19 Satellite Meeting “Frontiers in macromolecular crystallography”, Bishenberg, August, 31-September, 3, France, 31.
  • Lunin, V.Y. & Urzhumtsev, A.G. (2000). "Maximal Likelihood refinement. It works, but why?". Acta Cryst. A56, S, S201.
  • Lunin, V.Y. & Urzhumtsev, A. (2000). "Maximal Likelihood refinement. It works, but why?". 19th European Crystallographic Meeting, Abstract book, 25th-31st August 2000, Nancy, France, 201.
  • Lunina, N., Lunin, V.Y., Podjarny, A., Ritter, S., Frey, I., Keul, J., Diederichs, K., Baumstark, M. & Urzhumtsev, A. (2000). "Structure of human low density lipoprotein (LDL) at low resolution: structure determination and analysis". ECM19 Satellite Meeting “Frontiers in macromolecular crystallography”, Bishenberg, August, 31-September, 3, France, 32.
  • Lunina, N.L., Lunin, V.Y. & Urzhumtsev, A.G. (2000). "Use of map connectivity properties in macromolecular ab-initio phasing". 19th European Crystallographic Meeting, Abstract book, 25th-31st August 2000, Nancy, France, 62.
  • Lunina, N.L., Lunin, V.Y. & Urzhumtsev, A.G. (2000). "Use of map connectivity properties in macromolecular ab-initio phasing". Acta Cryst. A56, S, S62.
  • Ritter, S., Lunina, N.L., Lunin, V.Y., Urzhumtsev, A.G., Podjarny, A.D., Frey, I., Diederichs, K. & Baumstark, M.W. (2000). "Crystallizacion and structure determination of human low density lipoprotein (LDL) at low resolution, using ab initio phases". 19th European Crystallographic Meeting, Abstract book, 25th-31st August 2000 Nancy, France, 299.
  • Ritter, S., Lunina, N. L., Lunin, V. Y., Urzhumtsev, A. G., Podjarny, A.D., Frey, I., Diederichs, K. & Baumstark, M.W. (2000). "Crystallization and structure determination of human low density lipoprotein (LDL) at low resolution, using ab initio phases". Acta Cryst. A56, S, S299.
  • Urzhumtsev, A., Lunin, V.Y. & Lunina, N. (2000). "Density constraints and direct phasing". 19th European Crystallographic Meeting, Abstract book, 25th-31st August 2000 Nancy, France, 108.
  • Urzhumtsev, A., Lunin, V.Y. & Lunina, N. (2000). "Density constraints and direct phasing". Acta Cryst. A56, S, S108.
  • Urzhumtsev, A.G., Podjarny, A. & Lunin, V.Y. (2000). "Direct phasing at low resolution: current state and expectations". Millennium Symposium on Structural Biology, 26-29 March 2000, Heidelberg, Germany, Collected Abstracts, 103.
  • Urzhumtseva, L. & Urzhumtsev, A.G. (2000). "CALCRYS, a new programs in the Tcl/Tk based crystallographic package". 19th European Crystallographic Meeting, Abstract book, 25th-31st August 2000 Nancy, France, 198.
  • Urzhumtseva, L. & Urzhumtsev, A.G. (2000). "CALCRYS, a new programs in the Tcl/Tk based crystallographic package". Acta Cryst. A56, S, S198.
  • Lunin, V.Y., Urzhumtsev, A.G. & Podjarny, A.D. (1999). "Low resolution phasing. Achievements and perspectives". XVIII Congress and General Assembly of IUCr, Glasgow, Scotland, UK, August 4-13, 1999. Collected Abstracts, 121.
  • Lunina, N.L., Lunin, V.Y. & Urzhumtsev, A.G. (1999). "The connectivity-based choice in macromolecular low resolution ab-initio phasing". XVIII Congress and General Assembly of ICU, Glasgow, Scotland, UK, August 4-13, 1999. Collected Abstracts, 123.
  • Urzhumtsev, A.G. (1999). "Solvent modelling at low resolution". XVIII Congress and General Assembly of IUCr, Glasgow, Scotland, UK, August 4-13, 1999. Collected Abstracts, 122.
  • Urzhumtsev, A.G., Lunina, N. & Lunin, V. (1999) "Proprietes Topologiques et Phasage Direct". GTBio-99, 12-15 Oct. 1999, Hourtin (Bordeaux, France), CO31.
  • Lunin, V.Yu., Lunina, N.L., Petrova, T.E., Urzhumtsev, A.G. & Podjarny, A.D. (1998). "Very low resolution ab-initio phasing. Problems and advances". Eighteenth European Crystallographic Meeting, Praha, Czech Republic, August 15-20, 1998. Abstracts (A), 131-132.
  • Podjarny, A.D., Lunina, N., Urzhumtsev, A.G., Vernoslova, E.A., Petrova, T. & Lunin, V. (1998). "Ab-initio phasing at 30 A of the t50S ribosomal particle with the Few Atoms Model method". ACA Annual Meeting, Arlington, Virginia, July 18-23, 1998, 11.03.08, 74.
  • Podjarny, A.D., Urzhumtsev, A.G., Vernoslova, E.A., Petrova, T., Lunina, N. & Lunin, V. (1998). "Recent advances on the application of the few atom model method to the T50S ribosomal particle". Association Francaise de Cristallographie, AFC98, Orleans, 24-27 fevrier 1998, BCG-A02.
  • Urzhumtsev, A.G., Lunin, V.Y. & Lunina, N.L. (1998). "Seminvariant density decomposition and connectivity analysis in the low resolution macromolecular phasing". Eighteenth European Crystallographic Meeting, Praha, Czech Republic, August 15-20, 1998. Abstracts (A), 482-483.
  • Urzhumtseva L.M. & Urzhumtsev, A.G. (1998). "Ensemble des logiciels interactifs pour la cristallographie macromoléculaire". Association Francaise de Cristallographie, AFC98, Orleans, 24-27 fevrier 1998, BSG-A04.
  • Lunin, V.Yu., Lunina, N.L., Petrova, T.E., Urzhumtsev, A.G. & Podjarny, A.D. (1997). "A generalized likelihood and the phase cluster choice problem". In Direct methods for solving macromolecular structures, Lecture Notes, Erice, Italy, May 22 - June 02 1997, 485.
  • Лунин В.Ю., Уржумцев А.Г., Поджарни А.Д. (1997). "Решение фазовой проблемы при низком разрешении в кристаллографии белка". Национальная конференция по применению Рентгеновского, Синхротронного излучений, Нейтронов и Электронов для исследования материалов, Дубна, 25-29 мая 1997, Тезисы докладов, 212.
  • Lunin, V.Yu., Urzhumtsev, A.G. & Podjarny, A.D. (1997). "The use of generalized likelihood based approach in low-resolution ab-initio phasing". Seventeenth European Crystallographic Meeting, Collected abstracts, Lisboa - Portugal 24/28 August 1997, 53.
  • Лунина Н.Л., Лунин В.Ю., Уржумцев А.Г. (1997). "Выращивание плотности" - новый метод локального улучшения синтезов Фурье". Национальная конференция по применению Рентгеновского, Синхротронного излучений, Нейтронов и Электронов для исследования материалов, Дубна, 25-29 мая 1997, Тезисы докладов, 222.
  • Lunina, N.L. & Urzhumtsev, A. (1997). "Density growing: a new approach to the local improvement of electron density maps". XVIIth European Cryst.Meeting, 24-28 August 1997, Lisbon, Portugal, 92.
  • Podjarny, A. D., Urzhumtsev, A., Tete-Favier, F., Mitschler, A., Barbanton, J., Barth, P., Urzhumtseva, L., Biellmann, J.-F. & Moras, D. (1997). "The crystal structure of the complexes of aldose reductase with the inhibitors tolrestat and sorbinil". XVIIth European Cryst.Meeting, 24-28 August 1997, Lisbon, Portugal, 14.
  • Urzhumtsev, A.G., Lunin, V.Yu. & Podjarny, A,D. (1997). "Low Resolution Phasing: After First Images". Workshop "Validation and refinement of macromolecular structures", Abstracts, Porto, Portugal, August 29-30.
  • Urzhumtsev, A. & Urzhumtseva, L. (1997). "New interactive tcl/tk-based software for macromolecular crystallographers". XVIIth European Cryst.Meeting, 24-28 August 1997, Lisbon, Portugal, 184.
  • Grigera, J.R., Howard, E.I., Urzhumtsev, A.G. & Podjarny, A.D. (1996). "Hydration of biomacromolecules by multicopy molecular dynamics with diffraction constraints. Bringing into agreement diffraction and NMR data". Intern.Biophysics Congr. IUPAB, Amsterdam, the Netherlands, 1996, Coll.Abstr.
  • Howard, E.I., Grigera, J.R., Podjarny, A.D. & Urzhumtsev A.G. (1996). "Multicopy modeling of the solvent distribution in macromolecular crystals". XVII Intern.Cryst.Congr., Seattle, USA, August 8-17, 1996, Coll.Abstr., C-86.
  • Podjarny, A.D., Urzhumtsev, A.G., Howard, E.I. & Grigera, J.R. (1996). "Modelisation multicopie de la distribution du solvant dans les cristaux macromoleculaires". AFC96, 10-13 Sept. 1996, Toulouse, 42.
  • Podjarny, A.D., Urzhumtsev, A.G. & Vernoslova, E.A. (1996). "Very low resolution phasing attempts of the ribosome 50S particle from T. thermophilus by the Few Atoms Model method". XVII Intern.Cryst.Congr., Seattle, USA, August 8-17, 1996, Coll.Abstr., C-67.
  • Urzhumtsev, A.G., Podjarny, A.D., Mitschler, A., Tete-Favier, F., Barth, P., Biellmann, J.-F. & Moras, D. (1996). "Etudes cristallographiques des complexes de l’aldose reductase et ses inhibiteurs". Les Cahiers IMABIO, HS, 4, 82.
  • Lunin, V.Yu., Lunina, N.L., Petrova, T.E., Vernoslova, E.A., Urzhumtsev, A.G. & Podjarny, A.D. (1995). "On the ab-initio solution of the phase problem for macromolecules at very low resolution: the Few Atoms Models method". 4th European Workshop on Crystallography of Biological Macromolecules, Como(Italy), May 21-25, O19.
  • Lunin, V.Yu., Urzhumtsev, A.G., Vernoslova, E.A., Lunina, N.L., Petrova, T.E. & Podjarny, A.D. (1995). "La methode FAM pour le phasage ab-initio: Theorie". AFC95, 24-27 Jan. 1995, Grenoble, P07a.
  • Podjarny, A.D. & Urzhumtsev, A.G. (1995). "Le remplacement moleculaire a tres basse resolution". AFC95, Jan. 1995, Grenoble, BL08.
  • Urzhumtsev, A.G., Lunin, V.Yu., Vernoslova, E.A., Urzhumtseva, L.M. & Podjarny, A.D. (1995). "La methode FAM pour le phasage ab-initio: Applications". AFC95, 24-27 Jan. 1995, Grenoble, BL15.
  • Urzhumtsev, A.G. & Podjarny, A.D. (1995). "Very low resolution molecular replacement with envelope models". 4th European Workshop on Crystallography of Biological Macromolecules, Como(Italy), May 21-25, A04.
  • Zagari, A., Sica, F., Vitagliano, L., Scarano, G., Urzhumtsev, A.G., Podjarny, A.D. & Bocchini, V. (1995). "Cristallisation et analyse preliminaire par rayons X du facteur d’elongation hyperthermophile EF 1alpha". AFC95, 24-27 Jan. 1995, Grenoble, P43.
  • Zagari, A., Sica, F., Vitagliano, L., Scarano, G., Urzhumtsev, A.G., Podjarny, A.D. & Bocchini, V. (1995). "Crystallisation and preliminary X-ray analysis of a hyperthermophilic Archael elongation factor 1a". XXIV Congresso Nazionale, 27-29 Set. 1994, Pavia.
  • Lunin, V.Yu., Lunina, N.L., Petrova, T.E., Vernoslova, E.A., Urzhumtsev, A.G. & Podjarny, A.D. (1994). "A Monte Carlo Approach to low resolution phasing in protein crystallography". ACA Annual Meeting, June 25 - July 1, 1994, INFORUM, Atlanta, Georgia, Atlanta Convention Center, 178.
  • Podjarny, A.D., Urzhumtsev, A.G. & Navaza, J. (1994). "On the solution of the molecular replacement problem at very low resolution: application to a ribosome model crystal". ACA Annual Meeting, June 25 - July 1, 1994, INFORUM, Atlanta, Georgia, Atlanta Convention Center, 40.
  • Tete, F., Barth, P., Mitschler, A., Podjarny, A.D., Rondeau, J.-M., Urzhumtsev, A.G., Biellmann, J.F. & Moras, D. (1994). Proceeding of the 7th Symposia on Medical Chemistry, Paris.
  • Urzhumtsev, A.G., Lunin, V.Yu., Vernoslova, E.A., Lunina, N.L., Petrova, T.E., Navaza, J. & Podjarny, A.D. (1994). "Very low resolution phasing with simple models". 15th Eur. Cryst. Meeting, Dresden, Germany, 28.8-2.9/1994, Coll.Abstr., R.Oldenbourg Verlag, Munchen, 217.
  • Urzhumtsev, A.G. & Podjarny, A.D. (1993). "Enveloppes moleculaires modulées en fonction de la distance au bord". Runion francophone de cristallographie de macromolécules", Ste Odile(Strasbourg), 2-5 Juin 1993, P1.
  • Podjarny, A.D., Urzhumtsev, A.G., Cavarelli, J., Rees, B., Giege, R., Thierry, J.-C. & Moras, D. (1992). "The low-resolution structure of the cubic form of the aspartyl tRNA synthetase complex: comparison of molecular replacement results and previous ab-initio low-resolution phasing". XIVth Eur. Cryst. Meeting, 2-7 August 1992, Enschede, The Netherlands, 245.
  • Urzhumtsev, A.G. (1992). "PDB models: errors in stereochemistry". XIVth Eur. Cryst. Meeting, 2-7 August 1992, Enschede, The Netherlands, 234.
  • Urzhumtsev, A.G., Podjarny,A.D., Cavarelli, J., Rees, B., Giege, R., Thierry, J.-C. & Moras, D. (1992). "Low-resolution phasing of the cubic form of the aspartyl tRNA synthetase complex confirmed by molecular replacement results". Journees Annuelles de l’Association Francaise de Cristallographie; Paris, 5-7 Mai 1992, Ministere de la Recherche et de l’Espace, II-21.
  • Lunin, V.Yu., Urzhumtsev, A.G. & Skovoroda, T.A. (1990). "Direct low-resolution phasing in protein crystallography". 16th Int.School on Crystallography, Erice, Italy, 18-29 April, 1990, Coll.Abstr.
  • Lunin, V.Yu., Urzhumtsev, A.G. & Skovoroda, T.A. (1990). "Direct low-resolution phasing in protein crystallography". Acta Cryst., A46, S, C-113.
  • Morgunova, E.Yu., Urzhumtsev, A.G., Mikhailov, A.M. & Vainstein, B.K. (1990). "The CMtV capsid protein structure at 6A resolution". Acta Cryst., A46, S, C87-88.
  • Urzhumtsev, A.G. (1990). "Molecular bounding by two step filtration of SIR-synthesis". Acta Cryst., A46, S, C-114.
  • Chirgadze, Yu.N., Nevskaya, N.A., Urzhumtsev, A.G. & Vernoslova, E.A. (1989). "Structure refinement of “dry” form of calf lens γ-crystalline IIIb at 1.9A resolution". XIIth European Cryst. Meeting, Moscow, USSR, August 1989, Coll.Abstr., 2, 363.
  • Chirgadze, Yu.N., Vernoslova, E.A., Nikonov, S.V., Sergeev, Yu.V., Brazhnikov, E.V., Fomenkova, N.P., Lunin, V.Yu. & Urzhumtsev, A.G. (1989). "Refined structure of calf lens g-crystalline IIIb at 2.5A resolution". XIIth European Cryst. Meeting, Moscow, USSR, August 1989, Coll.Abstr., 2, 362.
  • Urzhumtsev, A.G., Lunin, V.Yu. & Vernoslova, E.A. (1989). "FROG - new refinement program". XIIth European Cryst. Meeting, Moscow, USSR, August 1989, Coll.Abstr., 3, 193.
  • Urzhumtsev, A.G., Lunin, V.Yu. & Luzyanina, T.B. (1986). "Macromolecular position determination with a noisy synthesis at low resolution". Xth European Cryst. Meeting, Wroclaw, Poland, Coll.Abstr., 1A-01, 51-52.
  • Chirgadze, Yu.N., Nevskaya, N.A., Lunin, V.Yu. & Urzhumtsev, A.G. (1984). "Molecular structure of calf lens protein γ-crystalline at 2.7A resolution". 16-th FEBS Conference, Moscow, 1984, Coll.Abstr., 232.
  • Lunin, V.Yu. & Urzhumtsev, A.G. (1984). "Program construction for refinement of the atomic structure of macromolecules based on the fast differentiation algorithm". Acta Cryst., A40, S, C-18.
  • Lunin, V.Yu., Urzhumtsev, A.G., Chirgadze, Yu.N., Fomenkova, N.P. & Nevskaya, N.A. (1984). "Crystal structure of the calf lens protein gamma-crystalline III". Acta Cryst., A40, S, C-32.
  • Кузин А.П., Уржумцев А.Г. (1983). "Уточнение кристаллической структуры актиноксантина при разрешении 1,8А МНК в обратном пространстве". VI Всесоюзный симпозиум по химии белков и пептидов, Рига, ноябрь 1983, Тезисы докладов, 186.
  • Фоменкова Н.П., Чиргадзе Ю.Н., Сергеев Ю.В., Невская Н.А., Никонов С.В., Лунин В.Ю., Уржумцев А.Г. (1982). "Структура g-кристаллинов: функционирование, пространственная гомология доменов, функциональные группы". I Всесоюзный Биофизический Конгресс, Москва 1982, Сборник тезисов, 17.
  • Chirgadze, Yu.N., Sergeev, Yu.V., Fomenkova, N.P., Lunin, V.Yu. & Urzhumtsev, A.G. (1981). "The structure γ-crystalline IIIb from calf lens". Acta Cryst., A37, S, C-40.
ИМПБ РАН © 1998-2024